BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039736
         (313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot...    52   6e-14
dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polypro...    52   6e-14
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    50   3e-13
emb|CAJ86032.1| H0105C05.3 [Oryza sativa Indica Group]                 51   4e-13
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]         50   1e-12

>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 280

 Score = 52.4 bits (124), Expect(2) = 6e-14
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +1

Query: 10  KYKADADKHRRLNTFEVGNLVIVHLRKERFPVGTYNKLKAKKIGP 144
           K K  ADK RR   F+ G+ V+V LRK RF VGTYNK+K +K GP
Sbjct: 175 KNKVAADKRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRKYGP 219



 Score = 49.7 bits (117), Expect(2) = 6e-14
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +2

Query: 155 ILQKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSPSK 304
           +L+KIN+NAYVV LP   +IS + NV D++ YH +  + P  + R+S S+
Sbjct: 222 VLRKINDNAYVVALPKSMNISNTFNVADIHEYHADGVLYPEENLRTSSSE 271


>dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 127

 Score = 52.4 bits (124), Expect(2) = 6e-14
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +1

Query: 10  KYKADADKHRRLNTFEVGNLVIVHLRKERFPVGTYNKLKAKKIGP 144
           K K  ADK RR   F+ G+ V+V LRK RF VGTYNK+K +K GP
Sbjct: 22  KNKVAADKRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRKYGP 66



 Score = 49.7 bits (117), Expect(2) = 6e-14
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +2

Query: 155 ILQKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSPSK 304
           +L+KIN+NAYVV LP   +IS + NV D++ YH +  + P  + R+S S+
Sbjct: 69  VLRKINDNAYVVALPKSMNISNTFNVADIHEYHADGVLYPEENLRTSSSE 118


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 49.7 bits (117), Expect(2) = 3e-13
 Identities = 27/47 (57%), Positives = 31/47 (65%)
 Frame = +1

Query: 4    NAKYKADADKHRRLNTFEVGNLVIVHLRKERFPVGTYNKLKAKKIGP 144
            NAKYK   DK RR  TFE G+LV +HLRKERFP    +KL  +  GP
Sbjct: 1461 NAKYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGP 1507



 Score = 49.7 bits (117), Expect(2) = 3e-13
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +2

Query: 155  ILQKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSPSKDGE 313
            +L KIN NAY +DLPA+F +S + NV DL  Y G ++    ++SR++  ++GE
Sbjct: 1510 VLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEED---ELESRTTQMQEGE 1559


>emb|CAJ86032.1| H0105C05.3 [Oryza sativa Indica Group]
          Length = 627

 Score = 51.2 bits (121), Expect(2) = 4e-13
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +2

Query: 155 ILQKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSPSKDGE 313
           +L KIN NAY +DLPA+F +S + NV DL  Y G ++    +DSR++  ++GE
Sbjct: 166 VLAKINENAYKIDLPADFEVSPTFNVADLKPYLGEED---ELDSRTTQMQEGE 215



 Score = 47.8 bits (112), Expect(2) = 4e-13
 Identities = 26/47 (55%), Positives = 30/47 (63%)
 Frame = +1

Query: 4   NAKYKADADKHRRLNTFEVGNLVIVHLRKERFPVGTYNKLKAKKIGP 144
           NAKYK   DK RR   FE G+LV +HLRKERFP    +KL  +  GP
Sbjct: 117 NAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGP 163


>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
          Length = 1431

 Score = 50.1 bits (118), Expect(2) = 1e-12
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +2

Query: 155  ILQKINNNAYVVDLPAEFSISKSLNVKDLYRYHGNDEILPSIDSRSSPSKDGE 313
            +L KIN NAY +DLPA+F +S + NV DL  Y G ++    ++SR++  ++GE
Sbjct: 1224 VLAKINENAYKIDLPADFGVSSTFNVADLKPYLGEED---ELESRTTQMQEGE 1273



 Score = 47.8 bits (112), Expect(2) = 1e-12
 Identities = 26/47 (55%), Positives = 30/47 (63%)
 Frame = +1

Query: 4    NAKYKADADKHRRLNTFEVGNLVIVHLRKERFPVGTYNKLKAKKIGP 144
            NAKYK   DK RR   FE G+LV +HLRKERFP    +KL  +  GP
Sbjct: 1175 NAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGP 1221