BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039684
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    93   2e-17
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    92   3e-17
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    91   1e-16
gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou...    75   4e-12
emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]    74   9e-12

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 45/102 (44%), Positives = 63/102 (61%)
 Frame = -2

Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127
           I   I+S+EQ GFI  RN +  + LASE IN L    +GG++A K+DIS+AFDTL+W+FL
Sbjct: 216 IMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFL 275

Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1
             VL Q GF E +  W+        +SI +N   +G+F+  R
Sbjct: 276 LKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSR 317


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/99 (46%), Positives = 66/99 (66%)
 Frame = -2

Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127
           I  RIIS EQ GFI +R+  + + LASE IN L+  +YGG++A+K+DI++AFDTLDW FL
Sbjct: 542 ITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFL 601

Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFT 10
            AVL + GF E ++ W+        +S+++N    G FT
Sbjct: 602 LAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFT 640


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/102 (44%), Positives = 61/102 (59%)
 Frame = -2

Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127
           I   IISKEQ GF+  RN +  I L SE IN L    +GG++A+KID+++AFDTL+W+FL
Sbjct: 277 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFL 336

Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1
             VL   GF E++  W+K     + M I +N    G F   R
Sbjct: 337 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNR 378


>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
           gi|31430304|gb|AAP52238.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 764

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/102 (36%), Positives = 59/102 (57%)
 Frame = -2

Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127
           IA+++I + Q  FIP R +   + +  E+++EL+  +  G I  K+D  +A+D + W FL
Sbjct: 75  IAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSG-IIFKLDFEKAYDKVQWSFL 133

Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1
             VLH+ GF + WIQW+K A  G  M++ +N   K  F   R
Sbjct: 134 FDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYR 175


>emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]
          Length = 1848

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/99 (36%), Positives = 57/99 (57%)
 Frame = -2

Query: 297  RIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL*AV 118
            +++SK Q  F+  R    A+ +A+E I+ +      G I  K+DI +A+D +DW FL  V
Sbjct: 1171 KVVSKAQGAFVEGRQILDAVLIANEAIDSILKNNENG-ILCKLDIEKAYDNVDWSFLLTV 1229

Query: 117  LHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1
            + ++GF E W+ W+K   S  S S+++N  PKG F   R
Sbjct: 1230 MQKMGFGEKWLGWIKWCISTASFSVLINGTPKGFFQSSR 1268