BLASTX nr result
ID: Coptis24_contig00039684
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039684 (310 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 93 2e-17 gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 92 3e-17 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 91 1e-16 gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou... 75 4e-12 emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera] 74 9e-12 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 93.2 bits (230), Expect = 2e-17 Identities = 45/102 (44%), Positives = 63/102 (61%) Frame = -2 Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127 I I+S+EQ GFI RN + + LASE IN L +GG++A K+DIS+AFDTL+W+FL Sbjct: 216 IMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFL 275 Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1 VL Q GF E + W+ +SI +N +G+F+ R Sbjct: 276 LKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSR 317 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 92.4 bits (228), Expect = 3e-17 Identities = 46/99 (46%), Positives = 66/99 (66%) Frame = -2 Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127 I RIIS EQ GFI +R+ + + LASE IN L+ +YGG++A+K+DI++AFDTLDW FL Sbjct: 542 ITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFL 601 Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFT 10 AVL + GF E ++ W+ +S+++N G FT Sbjct: 602 LAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFT 640 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 90.5 bits (223), Expect = 1e-16 Identities = 45/102 (44%), Positives = 61/102 (59%) Frame = -2 Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127 I IISKEQ GF+ RN + I L SE IN L +GG++A+KID+++AFDTL+W+FL Sbjct: 277 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFL 336 Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1 VL GF E++ W+K + M I +N G F R Sbjct: 337 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNR 378 >gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group] gi|31430304|gb|AAP52238.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 764 Score = 75.5 bits (184), Expect = 4e-12 Identities = 37/102 (36%), Positives = 59/102 (57%) Frame = -2 Query: 306 IAKRIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL 127 IA+++I + Q FIP R + + + E+++EL+ + G I K+D +A+D + W FL Sbjct: 75 IAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSG-IIFKLDFEKAYDKVQWSFL 133 Query: 126 *AVLHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1 VLH+ GF + WIQW+K A G M++ +N K F R Sbjct: 134 FDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYR 175 >emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera] Length = 1848 Score = 74.3 bits (181), Expect = 9e-12 Identities = 36/99 (36%), Positives = 57/99 (57%) Frame = -2 Query: 297 RIISKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKIDISQAFDTLDWEFL*AV 118 +++SK Q F+ R A+ +A+E I+ + G I K+DI +A+D +DW FL V Sbjct: 1171 KVVSKAQGAFVEGRQILDAVLIANEAIDSILKNNENG-ILCKLDIEKAYDNVDWSFLLTV 1229 Query: 117 LHQVGFCEVWIQWLKGAFSGNSMSIMLNSGPKGHFTVER 1 + ++GF E W+ W+K S S S+++N PKG F R Sbjct: 1230 MQKMGFGEKWLGWIKWCISTASFSVLINGTPKGFFQSSR 1268