BLASTX nr result
ID: Coptis24_contig00039678
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039678
(354 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containi... 155 4e-36
ref|XP_003610281.1| Pentatricopeptide repeat-containing protein ... 147 9e-34
emb|CBI36552.3| unnamed protein product [Vitis vinifera] 144 6e-33
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi... 144 6e-33
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 132 4e-29
>ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 155 bits (391), Expect = 4e-36
Identities = 70/118 (59%), Positives = 96/118 (81%)
Frame = +1
Query: 1 MSFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDS 180
+ Y KFS V ARKVFD+M DTV WNTMI+GLV+N C+D+S++VF++M +G + DS
Sbjct: 145 VDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDS 204
Query: 181 STLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
+T++ VLPAVAE+QE+K+GM IQC+A+K GFH D +VLTGL+S++SKC D+D+AR LF
Sbjct: 205 TTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLF 262
Score = 70.1 bits (170), Expect = 2e-10
Identities = 34/117 (29%), Positives = 63/117 (53%)
Frame = +1
Query: 4 SFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSS 183
+ Y + + + +AR++FD S +WN MISG ++G + +I +F+EM +
Sbjct: 348 TIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPV 407
Query: 184 TLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
T++++L A A+L L G + + + + +V T L+ +Y+KC +I A LF
Sbjct: 408 TITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF 464
Score = 65.9 bits (159), Expect = 3e-09
Identities = 40/118 (33%), Positives = 61/118 (51%)
Frame = +1
Query: 1 MSFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDS 180
+S + K V AR +F + PD VS+N +ISG NG + ++K F E+ G + S
Sbjct: 246 ISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSS 305
Query: 181 STLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
ST+ ++P + L + IQ +K G V T L ++YS+ +ID AR LF
Sbjct: 306 STMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLF 363
>ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 783
Score = 147 bits (371), Expect = 9e-34
Identities = 74/118 (62%), Positives = 90/118 (76%)
Frame = +1
Query: 1 MSFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDS 180
+ Y KFS V ARKVFD M DTV WNTMI+GLVKN CFD+SI++F EM G + DS
Sbjct: 150 VDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDS 209
Query: 181 STLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
ST++ VLPA AELQELK+GM IQC+A+K GF +VLTGL+SLYSKC D+++AR LF
Sbjct: 210 STVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLF 267
Score = 72.4 bits (176), Expect = 4e-11
Identities = 40/118 (33%), Positives = 63/118 (53%)
Frame = +1
Query: 1 MSFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDS 180
+S Y K V AR +F R++ PD +++N MISG NG + S+K+F E+ G + S
Sbjct: 251 ISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSS 310
Query: 181 STLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
ST+ ++P + L + I +K G + V T ++Y+K +ID AR LF
Sbjct: 311 STIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLF 368
Score = 69.7 bits (169), Expect = 2e-10
Identities = 37/117 (31%), Positives = 61/117 (52%)
Frame = +1
Query: 4 SFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSS 183
+ Y K + + +AR +FD V+WN MISG +NG + +I +F+EM ++
Sbjct: 353 AIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAV 412
Query: 184 TLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
T++ +L A A+L L G + + + +V T LV +Y+KC +I A LF
Sbjct: 413 TITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLF 469
>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 144 bits (364), Expect = 6e-33
Identities = 71/115 (61%), Positives = 86/115 (74%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y KFS V ARKVFD M DTV WNTM+SGLVKN CFDE+I +F +M G FDS+T+
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
+ VLP VAELQ+L +GM IQC+AMK GFH +V+TGL LYSKC +I++AR LF
Sbjct: 211 AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLF 265
Score = 69.7 bits (169), Expect = 2e-10
Identities = 38/115 (33%), Positives = 61/115 (53%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y K + AR +F ++ PD VS+N MISG N + S+++F+E+ G K +SS++
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSI 311
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
++P L + I K G + V T L ++YS+ +I+SAR LF
Sbjct: 312 VGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF 366
Score = 58.5 bits (140), Expect = 5e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y + + + AR +FD S SWN MISG +NG +++I +F+EM + + T+
Sbjct: 353 YSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTV 412
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVS 309
+++L A A+L L +G + + + F + F+L VS
Sbjct: 413 TSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVS 452
>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 144 bits (364), Expect = 6e-33
Identities = 71/115 (61%), Positives = 86/115 (74%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y KFS V ARKVFD M DTV WNTM+SGLVKN CFDE+I +F +M G FDS+T+
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
+ VLP VAELQ+L +GM IQC+AMK GFH +V+TGL LYSKC +I++AR LF
Sbjct: 211 AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLF 265
Score = 74.7 bits (182), Expect = 7e-12
Identities = 38/115 (33%), Positives = 64/115 (55%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y + + + AR +FD S SWN MISG +NG +++I +F+EM + + T+
Sbjct: 353 YSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTV 412
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
+++L A A+L L +G + + + F + FV T L+ +Y+KC I A+ LF
Sbjct: 413 TSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLF 467
Score = 69.7 bits (169), Expect = 2e-10
Identities = 38/115 (33%), Positives = 61/115 (53%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y K + AR +F ++ PD VS+N MISG N + S+++F+E+ G K +SS++
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSI 311
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
++P L + I K G + V T L ++YS+ +I+SAR LF
Sbjct: 312 VGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF 366
>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 132 bits (331), Expect = 4e-29
Identities = 66/118 (55%), Positives = 82/118 (69%)
Frame = +1
Query: 1 MSFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDS 180
+ Y KF+ +ARKVFD M DTV WNTMISG +N F++SI+VF +M G FDS
Sbjct: 155 VDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDS 214
Query: 181 STLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
+TL+ VL AVAELQE ++GM IQC+A K+G H D +VLTGL+SLYSKC R LF
Sbjct: 215 TTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272
Score = 72.4 bits (176), Expect = 4e-11
Identities = 40/115 (34%), Positives = 62/115 (53%)
Frame = +1
Query: 10 YLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDSSTL 189
Y + + V AR++FD SWN MISG +NG D +I +F+EM + + + T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP-NPVTV 418
Query: 190 SNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
+++L A A+L L IG + + + +V T LV +Y+KC I AR LF
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/118 (30%), Positives = 61/118 (51%)
Frame = +1
Query: 1 MSFYLKFSHVWIARKVFDRMSSPDTVSWNTMISGLVKNGCFDESIKVFEEMSGRGNKFDS 180
+S Y K R +FD++ PD +S+N MISG N + ++ +F E+ G + +S
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315
Query: 181 STLSNVLPAVAELQELKIGMKIQCMAMKRGFHDDGFVLTGLVSLYSKCRDIDSARFLF 354
STL ++P L++ IQ +++K G V T L ++Y + ++ AR LF
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373