BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039676
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319140.1| predicted protein [Populus trichocarpa] gi|2...   224   4e-57
ref|XP_002319139.1| predicted protein [Populus trichocarpa] gi|2...   224   4e-57
ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containi...   215   3e-54
ref|XP_002525469.1| pentatricopeptide repeat-containing protein,...   213   1e-53
ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containi...   204   5e-51

>ref|XP_002319140.1| predicted protein [Populus trichocarpa] gi|222857516|gb|EEE95063.1|
           predicted protein [Populus trichocarpa]
          Length = 296

 Score =  224 bits (572), Expect = 4e-57
 Identities = 105/132 (79%), Positives = 117/132 (88%)
 Frame = +2

Query: 2   EAFDLMKTMEEKGFKPNVVTYNSLIKPLCKGHRVEEAKVVFDEMLQKGFSPTIRTYHAFF 181
           EAF+LMKTMEEKG  PN+VTYNSLIKPLC+  +VEEAK  FD+ML++  SPTIRTYHAF 
Sbjct: 63  EAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAFL 122

Query: 182 GILKTGEEVFELLEKMKNAGCHPVNDTYIMLIRKFCRWRQIENVFKLWSEMSENGLSPDR 361
            IL+TGEEVF LLEKM+  GC P+NDTYIMLIRKFCRWRQ+ENVFKLW EMSENG+SPDR
Sbjct: 123 RILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGISPDR 182

Query: 362 SSYIVLIHGLFL 397
           SSYIVLIHGLFL
Sbjct: 183 SSYIVLIHGLFL 194


>ref|XP_002319139.1| predicted protein [Populus trichocarpa] gi|222857515|gb|EEE95062.1|
           predicted protein [Populus trichocarpa]
          Length = 518

 Score =  224 bits (572), Expect = 4e-57
 Identities = 105/132 (79%), Positives = 117/132 (88%)
 Frame = +2

Query: 2   EAFDLMKTMEEKGFKPNVVTYNSLIKPLCKGHRVEEAKVVFDEMLQKGFSPTIRTYHAFF 181
           EAF+LMKTMEEKG  PN+VTYNSLIKPLC+  +VEEAK  FD+ML++  SPTIRTYHAF 
Sbjct: 285 EAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAFL 344

Query: 182 GILKTGEEVFELLEKMKNAGCHPVNDTYIMLIRKFCRWRQIENVFKLWSEMSENGLSPDR 361
            IL+TGEEVF LLEKM+  GC P+NDTYIMLIRKFCRWRQ+ENVFKLW EMSENG+SPDR
Sbjct: 345 RILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGISPDR 404

Query: 362 SSYIVLIHGLFL 397
           SSYIVLIHGLFL
Sbjct: 405 SSYIVLIHGLFL 416


>ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  215 bits (547), Expect = 3e-54
 Identities = 102/132 (77%), Positives = 113/132 (85%)
 Frame = +2

Query: 2   EAFDLMKTMEEKGFKPNVVTYNSLIKPLCKGHRVEEAKVVFDEMLQKGFSPTIRTYHAFF 181
           EA +LMK ME KG  P+ VTYNSLIKPL +  ++ EAK VFDEMLQ+G SPTIRTYHAFF
Sbjct: 343 EALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFF 402

Query: 182 GILKTGEEVFELLEKMKNAGCHPVNDTYIMLIRKFCRWRQIENVFKLWSEMSENGLSPDR 361
            ILK+GEEVF LLEKMK  GCHP  DTYIMLIR+FCRWRQ++NVFKLWSEMSENG+ PDR
Sbjct: 403 RILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDR 462

Query: 362 SSYIVLIHGLFL 397
           SSYIVLIHGLFL
Sbjct: 463 SSYIVLIHGLFL 474



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
 Frame = +2

Query: 2   EAFDLMKTMEEKGFKPNVVTYNSLIKPLCKGHRVEEAKVVFDEMLQKGFSPTIRTYHAFF 181
           EA    + M  +G + +VV+Y+S+I    K   + +   +F++M +   +P  + Y+A  
Sbjct: 273 EAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVYNAVV 332

Query: 182 GILKTG---EEVFELLEKMKNAGCHPVNDTYIMLIRKFCRWRQIENVFKLWSEMSENGLS 352
             L      +E   L++ M+  G  P + TY  LI+   R R+I    +++ EM + GLS
Sbjct: 333 HALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLS 392

Query: 353 PDRSSY 370
           P   +Y
Sbjct: 393 PTIRTY 398


>ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535282|gb|EEF36959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 581

 Score =  213 bits (543), Expect = 1e-53
 Identities = 99/132 (75%), Positives = 113/132 (85%)
 Frame = +2

Query: 2   EAFDLMKTMEEKGFKPNVVTYNSLIKPLCKGHRVEEAKVVFDEMLQKGFSPTIRTYHAFF 181
           EA +LMKTMEEKG  PN VTYNSLIKPLC+  +++EA+ +FDEMLQ G SPTIRTYHAFF
Sbjct: 357 EAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFF 416

Query: 182 GILKTGEEVFELLEKMKNAGCHPVNDTYIMLIRKFCRWRQIENVFKLWSEMSENGLSPDR 361
             L+TGEEVF LLE M+  GCHP  DTYIMLIRKFCRWRQ ++VFKLW+++SENGL PDR
Sbjct: 417 RSLRTGEEVFALLENMRKLGCHPTIDTYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDR 476

Query: 362 SSYIVLIHGLFL 397
           SSYIVLIHGLFL
Sbjct: 477 SSYIVLIHGLFL 488


>ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
           gi|449477985|ref|XP_004155184.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  204 bits (520), Expect = 5e-51
 Identities = 94/132 (71%), Positives = 112/132 (84%)
 Frame = +2

Query: 2   EAFDLMKTMEEKGFKPNVVTYNSLIKPLCKGHRVEEAKVVFDEMLQKGFSPTIRTYHAFF 181
           EA DL+KTMEEKG   NVVTYNS+IKPLCK  R +EA+ VF+E+LQ+G  PTI+TYHAF 
Sbjct: 272 EAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFL 331

Query: 182 GILKTGEEVFELLEKMKNAGCHPVNDTYIMLIRKFCRWRQIENVFKLWSEMSENGLSPDR 361
             L+T EE+FELL+KM+  GC+P  DTYIMLIRKFCRWRQ++NV ++W EMSENG+SPDR
Sbjct: 332 RFLRTEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDR 391

Query: 362 SSYIVLIHGLFL 397
           SSYIVLIHGLFL
Sbjct: 392 SSYIVLIHGLFL 403