BLASTX nr result
ID: Coptis24_contig00039667
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039667
(393 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containi... 180 1e-43
emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera] 179 3e-43
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi... 164 7e-39
ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containi... 154 5e-36
ref|XP_002518758.1| pentatricopeptide repeat-containing protein,... 150 1e-34
>ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 180 bits (456), Expect = 1e-43
Identities = 89/129 (68%), Positives = 108/129 (83%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHC 182
+VSWNS+IAAYEQN DP+ A G+FV+M+ NGFQPD+LT VSLASIVAQS D +NS+SVH
Sbjct: 382 VVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHG 441
Query: 183 CIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLAS 362
I++ + D+ IGNAVVDMY+KLG +D AH+VF+ + KDVISWNTLITGYAQNGLAS
Sbjct: 442 FIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLAS 501
Query: 363 EAMEVYKTM 389
EA+EVYK M
Sbjct: 502 EAIEVYKMM 510
Score = 86.7 bits (213), Expect = 2e-15
Identities = 42/114 (36%), Positives = 67/114 (58%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHCCI 188
SWN++I+ QN + AL EM+ G + + +T VS+ + Q GD + +H +
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342
Query: 189 IKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQN 350
IK L D+F+ NA+++MY+K GN++ A + F M DV+SWN++I Y QN
Sbjct: 343 IKHGL-EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395
Score = 77.4 bits (189), Expect = 1e-12
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKR-NGFQPDILTFVSLASIVAQSGDAENSKSVHCC 185
+WNS+I+AY N A+G F ++ + +PD TF ++ G + + +HC
Sbjct: 184 AWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF---PPVLKACGTLVDGRKIHCW 240
Query: 186 IIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLASE 365
KL + ++F+ +++ MYS+ G A +FD M +D+ SWN +I+G QNG A++
Sbjct: 241 AFKLGF-QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 299
Query: 366 AMEVYKTMR 392
A++V MR
Sbjct: 300 ALDVLDEMR 308
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKR-NGFQPDILTFVSLASIVAQSGDAENSKSVH 179
++SWN+LI Y QN A+ + M+ P+ T+VS+ A G + +H
Sbjct: 484 VISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIH 543
Query: 180 CCIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLA 359
+IK +L D+F+ ++D+Y K G + A +F + + ++WN +I+ + +G A
Sbjct: 544 GRVIKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHA 602
Query: 360 SEAMEVYKTM 389
+ ++++ M
Sbjct: 603 EKTLKLFGEM 612
>emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 179 bits (453), Expect = 3e-43
Identities = 89/129 (68%), Positives = 108/129 (83%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHC 182
+VSWNS+IAAYEQN DP+ A G+FV+M+ NGFQPD+LT VSLASIVAQS D +NS+SVH
Sbjct: 382 VVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHG 441
Query: 183 CIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLAS 362
I++ + D+ IGNAVVDMY+KLG +D AH+VF+ + KDVISWNTLITGYAQNGLAS
Sbjct: 442 FIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLAS 501
Query: 363 EAMEVYKTM 389
EA+EVYK M
Sbjct: 502 EAIEVYKMM 510
Score = 86.7 bits (213), Expect = 2e-15
Identities = 42/114 (36%), Positives = 67/114 (58%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHCCI 188
SWN++I+ QN + AL EM+ G + + +T VS+ + Q GD + +H +
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342
Query: 189 IKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQN 350
IK L D+F+ NA+++MY+K GN++ A + F M DV+SWN++I Y QN
Sbjct: 343 IKHGL-EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395
Score = 77.0 bits (188), Expect = 1e-12
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKR-NGFQPDILTFVSLASIVAQSGDAENSKSVHCC 185
+WNS+I+AY N A+G F ++ + +PD TF ++ G + + +HC
Sbjct: 184 TWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF---PPVLKACGTLVDGRRIHCW 240
Query: 186 IIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLASE 365
KL + ++F+ +++ MYS+ G A +FD M +D+ SWN +I+G QNG A++
Sbjct: 241 AFKLGF-QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 299
Query: 366 AMEVYKTMR 392
A++V MR
Sbjct: 300 ALDVLDEMR 308
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKR-NGFQPDILTFVSLASIVAQSGDAENSKSVH 179
++SWN+LI Y QN A+ + M+ P+ T+VS+ A G + +H
Sbjct: 484 VISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIH 543
Query: 180 CCIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLA 359
+IK +L D+F+ ++D+Y K G + A +F + + ++WN +I+ + +G A
Sbjct: 544 GRVIKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHA 602
Query: 360 SEAMEVYKTM 389
+ ++++ M
Sbjct: 603 EKTLKLFGEM 612
>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 164 bits (415), Expect = 7e-39
Identities = 80/129 (62%), Positives = 103/129 (79%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHC 182
+VSWNS+IAAYEQN DP+ A G+F +M+ NG +PD+LT VSLASI AQS D +NS+SVH
Sbjct: 339 VVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHG 398
Query: 183 CIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLAS 362
I++ + + IGNAV+DMY+KLG ID AH+VF+ + KDV+SWNTLI+GY QNGLAS
Sbjct: 399 FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLAS 458
Query: 363 EAMEVYKTM 389
EA+EVY+ M
Sbjct: 459 EAIEVYRMM 467
Score = 87.8 bits (216), Expect = 8e-16
Identities = 43/114 (37%), Positives = 67/114 (58%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHCCI 188
SWN++I+ QN + AL EM+ G D +T S+ + AQ GD + +H +
Sbjct: 240 SWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV 299
Query: 189 IKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQN 350
IK L ++F+ NA+++MY+K GN+ A +VF M +DV+SWN++I Y QN
Sbjct: 300 IKHGL-EFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQN 352
Score = 77.4 bits (189), Expect = 1e-12
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKR-NGFQPDILTFVSLASIVAQSGDAENSKSVHCC 185
+WNS+I+AY +N A+ F ++ FQ D TF + D + +HC
Sbjct: 141 TWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDG---RKIHCW 197
Query: 186 IIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLASE 365
+ KL + D+F+ +++ MYS+ G + A +FD M +D+ SWN +I+G QNG A++
Sbjct: 198 VFKLGF-QWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ 256
Query: 366 AMEVYKTMR 392
A++V MR
Sbjct: 257 ALDVLDEMR 265
Score = 61.2 bits (147), Expect = 8e-08
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKR-NGFQPDILTFVSLASIVAQSGDAENSKSVH 179
+VSWN+LI+ Y QN A+ + M+ + + T+VS+ + A G + +H
Sbjct: 441 VVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIH 500
Query: 180 CCIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLA 359
+IK +L D+F+G ++D+Y K G + A +F + + + WN +I+ + +G
Sbjct: 501 GHLIKTNL-HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHG 559
Query: 360 SEAMEVYKTMR 392
+A+++++ M+
Sbjct: 560 EKALKLFREMQ 570
>ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 154 bits (390), Expect = 5e-36
Identities = 76/129 (58%), Positives = 97/129 (75%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHC 182
LVSWNS+IAAYEQN DP+ ALG+F EM G +PD+LT VSLASI Q D ++VH
Sbjct: 314 LVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHG 373
Query: 183 CIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLAS 362
+++ + DI IGNA+V+MY+KLG+ID A VF+ + ++DVISWNTLITGYAQNGLAS
Sbjct: 374 FVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLAS 433
Query: 363 EAMEVYKTM 389
EA++ Y M
Sbjct: 434 EAIDAYNMM 442
Score = 95.9 bits (237), Expect = 3e-18
Identities = 50/127 (39%), Positives = 73/127 (57%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHCCI 188
SWN++I+ + QN + AL MK + D +T S+ I AQS D VH +
Sbjct: 215 SWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYV 274
Query: 189 IKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLASEA 368
IK L D+F+ NA+++MYSK G + A RVFDGM+ +D++SWN++I Y QN A
Sbjct: 275 IKHGL-ESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333
Query: 369 MEVYKTM 389
+ +K M
Sbjct: 334 LGFFKEM 340
Score = 80.1 bits (196), Expect = 2e-13
Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEM-KRNGFQPDILTFVSLASIVAQSGDAENSKSVH 179
+ SWNS+++AY + ++ E+ +G +PD TF + D E +H
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEK---MH 170
Query: 180 CCIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLA 359
C ++K+ D+++ +++ +YS+ G ++ AH+VF M +DV SWN +I+G+ QNG
Sbjct: 171 CWVLKMGF-EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNV 229
Query: 360 SEAMEVYKTMR 392
+EA+ V M+
Sbjct: 230 AEALRVLDRMK 240
Score = 64.3 bits (155), Expect = 1e-08
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKRNG-FQPDILTFVSLASIVAQSGDAENSKSVH 179
++SWN+LI Y QN A+ + M+ P+ T+VS+ + G + +H
Sbjct: 416 VISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIH 475
Query: 180 CCIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLA 359
+IK L D+F+ ++DMY K G ++ A +F + + + WN +I+ +G
Sbjct: 476 GRLIKNCLFL-DVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHG 534
Query: 360 SEAMEVYKTMR 392
+A++++K MR
Sbjct: 535 EKALQLFKDMR 545
>ref|XP_002518758.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542139|gb|EEF43683.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 379
Score = 150 bits (379), Expect = 1e-34
Identities = 76/129 (58%), Positives = 95/129 (73%)
Frame = +3
Query: 3 LVSWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHC 182
+VSWNS+IAAYEQN D A +F +M++ G +PD+LT +SLASIVAQ D +NS+S+H
Sbjct: 124 IVSWNSIIAAYEQNDDAATARSFFDKMRQIGVRPDLLTVLSLASIVAQLNDHQNSRSIHG 183
Query: 183 CIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLAS 362
+ + D IGNAVVDMY+KLG + A VF+ + KDVISWNTLITGYAQNGLAS
Sbjct: 184 FVTRRGWFMKDTVIGNAVVDMYAKLGATESARAVFERLPVKDVISWNTLITGYAQNGLAS 243
Query: 363 EAMEVYKTM 389
EA+EVY M
Sbjct: 244 EAIEVYNMM 252
Score = 94.0 bits (232), Expect = 1e-17
Identities = 46/128 (35%), Positives = 74/128 (57%)
Frame = +3
Query: 9 SWNSLIAAYEQNSDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKSVHCCI 188
SWN++I+ Y QN + + L EM+++G D S+ + A+ D + K +H +
Sbjct: 25 SWNAMISGYCQNGNVVEVLDIVDEMRKDGVAMDAFAVASILPVCAKLNDVLSGKLIHLLV 84
Query: 189 IKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNGLASEA 368
IKL L D F+ NA++ MY+K G++ A +VFD M +D++SWN++I Y QN A+ A
Sbjct: 85 IKLGL-EFDSFVSNALIAMYAKFGSLGLAQKVFDHMVVRDIVSWNSIIAAYEQNDDAATA 143
Query: 369 MEVYKTMR 392
+ MR
Sbjct: 144 RSFFDKMR 151
Score = 68.2 bits (165), Expect = 7e-10
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Frame = +3
Query: 3 LVSWNSLIAAYEQN---SDPIAALGYFVEMKRNGFQPDILTFVSLASIVAQSGDAENSKS 173
++SWN+LI Y QN S+ I E K P T+VS+ + G
Sbjct: 226 VISWNTLITGYAQNGLASEAIEVYNMMEECKE--VSPTQGTWVSILPAYSHLGALHQGMR 283
Query: 174 VHCCIIKLDLIRGDIFIGNAVVDMYSKLGNIDYAHRVFDGMDNKDVISWNTLITGYAQNG 353
H +IK L D+F+G ++DMY K G +D A +F + KD + WN +I+ +A +G
Sbjct: 284 THGHVIKNSL-HLDVFVGTCLIDMYGKCGKLDDAMSLFYEVPRKDAVPWNAIISCHAVHG 342
Query: 354 LASEAMEVYKTM 389
+ +++++ M
Sbjct: 343 HGEKVIKLFREM 354