BLASTX nr result
ID: Coptis24_contig00039608
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039608 (301 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002308653.1| predicted protein [Populus trichocarpa] gi|1... 122 4e-26 ref|XP_002324286.1| predicted protein [Populus trichocarpa] gi|2... 120 9e-26 ref|XP_002285376.1| PREDICTED: uncharacterized RNA-binding prote... 119 2e-25 emb|CAN76349.1| hypothetical protein VITISV_028497 [Vitis vinifera] 119 2e-25 ref|NP_001236842.1| uncharacterized protein LOC100499847 [Glycin... 119 3e-25 >ref|XP_002308653.1| predicted protein [Populus trichocarpa] gi|118482028|gb|ABK92945.1| unknown [Populus trichocarpa] gi|222854629|gb|EEE92176.1| predicted protein [Populus trichocarpa] Length = 159 Score = 122 bits (305), Expect = 4e-26 Identities = 55/90 (61%), Positives = 60/90 (66%), Gaps = 11/90 (12%) Frame = -1 Query: 277 MSRPGDWNCRSCQHLNFSWRDTCQACGDSRSGE-----------SYGSIGLCGPAILPGD 131 MSRPGDWNCRSCQHLNF RD+CQ CGD R GE S GS G GP + PGD Sbjct: 1 MSRPGDWNCRSCQHLNFQRRDSCQRCGDPRPGERDHYGSFGGRSSGGSFGFTGPDVRPGD 60 Query: 130 WCCAARNCGVHNFASRMICFKCGALRNESA 41 W C A NCG HNFASR CFKCG ++ES+ Sbjct: 61 WYCTAGNCGAHNFASRSSCFKCGVSKDESS 90 Score = 57.0 bits (136), Expect = 2e-06 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%) Frame = -1 Query: 271 RPGDWNCRS--CQHLNFSWRDTCQACGDSRSGESYGSI-----------------GLCGP 149 RPGDW C + C NF+ R +C CG S+ S G + G G Sbjct: 57 RPGDWYCTAGNCGAHNFASRSSCFKCGVSKDESSGGGLDADMSRMRGYGFGGGGGGGSGS 116 Query: 148 AI--LPGDWCCAARNCGVHNFASRMICFKCGALRNESA 41 + GDW C C HNFASR C++C A R S+ Sbjct: 117 SRNWKSGDWICTRSGCNEHNFASRTECYRCNAPRESSS 154 >ref|XP_002324286.1| predicted protein [Populus trichocarpa] gi|222865720|gb|EEF02851.1| predicted protein [Populus trichocarpa] Length = 155 Score = 120 bits (302), Expect = 9e-26 Identities = 54/89 (60%), Positives = 60/89 (67%), Gaps = 10/89 (11%) Frame = -1 Query: 277 MSRPGDWNCRSCQHLNFSWRDTCQACGDSRSGE----------SYGSIGLCGPAILPGDW 128 MSRPGDWNCRSCQHLNF RD+CQ CGD R GE S GS G GP + PGDW Sbjct: 1 MSRPGDWNCRSCQHLNFQRRDSCQRCGDPRPGERDHYGSFGGRSGGSFGFTGPDVRPGDW 60 Query: 127 CCAARNCGVHNFASRMICFKCGALRNESA 41 C+ NCG HNFASR CFKCG ++ES+ Sbjct: 61 YCSVGNCGAHNFASRSSCFKCGMSKDESS 89 >ref|XP_002285376.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Vitis vinifera] gi|297743402|emb|CBI36269.3| unnamed protein product [Vitis vinifera] Length = 150 Score = 119 bits (299), Expect = 2e-25 Identities = 56/95 (58%), Positives = 64/95 (67%), Gaps = 9/95 (9%) Frame = -1 Query: 277 MSRPGDWNCRSCQHLNFSWRDTCQACGDSRSGE----SYG-----SIGLCGPAILPGDWC 125 MSRPGDWNCRSCQH+NF RD+CQ CGD +SG S+G S G G + PGDW Sbjct: 1 MSRPGDWNCRSCQHMNFQRRDSCQRCGDPKSGGGDFGSFGGRGGSSFGFTGSDVRPGDWY 60 Query: 124 CAARNCGVHNFASRMICFKCGALRNESATVYQNAM 20 C A NCG HNFASR CFKCGA ++ESA Y + M Sbjct: 61 CNAGNCGAHNFASRSNCFKCGAFKDESAGGYDSDM 95 >emb|CAN76349.1| hypothetical protein VITISV_028497 [Vitis vinifera] Length = 137 Score = 119 bits (299), Expect = 2e-25 Identities = 56/95 (58%), Positives = 64/95 (67%), Gaps = 9/95 (9%) Frame = -1 Query: 277 MSRPGDWNCRSCQHLNFSWRDTCQACGDSRSGE----SYG-----SIGLCGPAILPGDWC 125 MSRPGDWNCRSCQH+NF RD+CQ CGD +SG S+G S G G + PGDW Sbjct: 1 MSRPGDWNCRSCQHMNFQRRDSCQRCGDPKSGGGDFGSFGGRGGSSFGFTGSDVRPGDWY 60 Query: 124 CAARNCGVHNFASRMICFKCGALRNESATVYQNAM 20 C A NCG HNFASR CFKCGA ++ESA Y + M Sbjct: 61 CNAGNCGAHNFASRSNCFKCGAFKDESAGGYDSDM 95 >ref|NP_001236842.1| uncharacterized protein LOC100499847 [Glycine max] gi|255627109|gb|ACU13899.1| unknown [Glycine max] Length = 144 Score = 119 bits (298), Expect = 3e-25 Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 10/95 (10%) Frame = -1 Query: 277 MSRPGDWNCRSCQHLNFSWRDTCQACGDSRSGESY----------GSIGLCGPAILPGDW 128 MSRPGDWNCRSCQHLNF RD+CQ CGD++ G+ S GL G + PGDW Sbjct: 1 MSRPGDWNCRSCQHLNFQRRDSCQRCGDAKYGDRVDFGGFGGRGGSSFGLTGSDVRPGDW 60 Query: 127 CCAARNCGVHNFASRMICFKCGALRNESATVYQNA 23 CAA NCG HNFASR CFKCGA +++ A Y ++ Sbjct: 61 YCAAANCGAHNFASRSSCFKCGAFKDDLAGSYNSS 95