BLASTX nr result
ID: Coptis24_contig00039603
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039603
(302 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi... 125 5e-27
ref|XP_003596787.1| Pentatricopeptide repeat-containing protein ... 117 1e-24
ref|XP_002523781.1| pentatricopeptide repeat-containing protein,... 116 2e-24
ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containi... 115 4e-24
ref|XP_002306231.1| predicted protein [Populus trichocarpa] gi|2... 112 2e-23
>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 125 bits (313), Expect = 5e-27
Identities = 59/99 (59%), Positives = 76/99 (76%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GT+L D+Y K+ +A +FELIDEKD VAWSAMLSGYAQ+ + EGAVK+F ++ KEG
Sbjct: 429 VGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEG 488
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYN 297
++PN F +SV++AC P ASVEQGKQ H SIK+GF N
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN 527
Score = 76.6 bits (187), Expect = 2e-12
Identities = 40/100 (40%), Positives = 63/100 (63%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GTSL+D Y+K + +D VF+ + K+ V+W+++L+GY Q E A+KLF++M EG
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEG 188
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYNT 300
IKPN F +V+ +VE+G Q H + IK+G +T
Sbjct: 189 IKPNPFTFAAVLGGLAAD-GAVEKGVQVHTMVIKSGLDST 227
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDE-KDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKE 177
I T+L+ Y K DA +F ++ ++ V+W+A++SGY Q + A+ LF +M +E
Sbjct: 331 IKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRRE 390
Query: 178 GIKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYNT 300
G++PN F +++++A S Q H + +KT + N+
Sbjct: 391 GVRPNHFTYSTILTANAAVSPS-----QIHALVVKTNYENS 426
>ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 867
Score = 117 bits (292), Expect = 1e-24
Identities = 57/99 (57%), Positives = 71/99 (71%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GT+LLD Y+KL T DAV VFE+I+ KD +AWSAML+GYAQ E A KLF +++KEG
Sbjct: 430 VGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG 489
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYN 297
IKPN F +SVI+AC P A+ EQGKQ H +IK N
Sbjct: 490 IKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNN 528
Score = 60.8 bits (146), Expect = 1e-07
Identities = 33/97 (34%), Positives = 57/97 (58%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GTSL+D Y+K + D VF+ + E++ V+W+++L+GY+ +LF +M EG
Sbjct: 130 VGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG 189
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGF 291
+ PN + +++VI+A V G Q H + +K GF
Sbjct: 190 VLPNRYTVSTVIAALVNE-GVVGIGLQVHAMVVKHGF 225
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +1
Query: 7 TSLLDTYIKLKMTKDAVTVFELIDE-KDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEGI 183
T+L+ K K DA+++F L++E K+ V+W+AM+SG Q + AV LF++M +EG+
Sbjct: 334 TALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGV 393
Query: 184 KPNAFVLTSVIS 219
KPN F +++++
Sbjct: 394 KPNHFTYSAILT 405
>ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536869|gb|EEF38507.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 661
Score = 116 bits (290), Expect = 2e-24
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GT+LLD Y+KL +A VFE ID+KD VAWSAM++GYAQ + EGAVK+ +M K+G
Sbjct: 434 VGTALLDAYVKLGNLNEASKVFERIDDKDIVAWSAMVAGYAQTGDTEGAVKILIQMAKKG 493
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGF 291
++PN + +SVI+ACT P A+VEQGKQ H SIK+ F
Sbjct: 494 VEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIKSRF 530
Score = 70.1 bits (170), Expect = 2e-10
Identities = 36/100 (36%), Positives = 58/100 (58%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GTSL+D Y+K + ++ VF+ ++E++ V+W+++L GYA A++ F EM
Sbjct: 133 VGTSLVDMYMKSEYVEEGKRVFDEMEERNVVSWTSLLVGYAHNGLNMEALECFFEMQAGA 192
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYNT 300
IKPN F +V+ A A ++G Q H + IK GF T
Sbjct: 193 IKPNPFTFATVLGALADSKAIADKGVQIHTMVIKNGFEAT 232
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/94 (30%), Positives = 54/94 (57%)
Frame = +1
Query: 10 SLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEGIKP 189
SL++ Y K M K+A VF+ + +D+++W++M++GY A+++F + G+K
Sbjct: 238 SLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEMFYHLRLAGVKL 297
Query: 190 NAFVLTSVISACTGPMASVEQGKQCHGISIKTGF 291
F+ +SVI +C + + +Q HG +K GF
Sbjct: 298 TNFIFSSVIKSCAN-IKELGFARQLHGQVLKGGF 330
>ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 115 bits (288), Expect = 4e-24
Identities = 55/99 (55%), Positives = 70/99 (70%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GT+LLD ++K+ DAV VFELI+ KD +AWSAML+GYAQ E A K+F ++ +EG
Sbjct: 439 VGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREG 498
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYN 297
IKPN F S+I+ACT P ASVEQGKQ H +IK N
Sbjct: 499 IKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNN 537
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/97 (31%), Positives = 57/97 (58%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+G SL+D Y K +D VF+ + ++D V+W+++L+GY+ + + +LF M EG
Sbjct: 139 VGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEG 198
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGF 291
+P+ + +++VI+A +V G Q H + +K GF
Sbjct: 199 YRPDYYTVSTVIAALAN-QGAVAIGMQIHALVVKLGF 234
Score = 54.7 bits (130), Expect = 8e-06
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 7 TSLLDTYIKLKMTKDAVTVFELIDEKDSV-AWSAMLSGYAQVQNPEGAVKLFTEMLKEGI 183
T+L+ K K DA ++F L+ SV +W+AM+SGY Q + + AV LF+ M +EG+
Sbjct: 343 TALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV 402
Query: 184 KPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGF 291
KPN F +++++ S + H IKT +
Sbjct: 403 KPNHFTYSTILTVQHAVFIS-----EIHAEVIKTNY 433
Score = 54.7 bits (130), Expect = 8e-06
Identities = 27/75 (36%), Positives = 45/75 (60%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+ +SL+ Y K + A +F+ E+D V+W++M+SGYAQ + A+++F EM K
Sbjct: 541 VSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRN 600
Query: 181 IKPNAFVLTSVISAC 225
++ +A VISAC
Sbjct: 601 LEVDAITFIGVISAC 615
>ref|XP_002306231.1| predicted protein [Populus trichocarpa] gi|222849195|gb|EEE86742.1|
predicted protein [Populus trichocarpa]
Length = 480
Score = 112 bits (281), Expect = 2e-23
Identities = 53/99 (53%), Positives = 70/99 (70%)
Frame = +1
Query: 1 IGTSLLDTYIKLKMTKDAVTVFELIDEKDSVAWSAMLSGYAQVQNPEGAVKLFTEMLKEG 180
+GT+LLD Y+K +A VF+ I+EKD VAWSAM+ GYAQ+ + EGAV++F +M KE
Sbjct: 43 VGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEK 102
Query: 181 IKPNAFVLTSVISACTGPMASVEQGKQCHGISIKTGFYN 297
IKPN + + +I+AC P A VEQGKQ H SIK+ F N
Sbjct: 103 IKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNN 141