BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039584
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532784.1| pentatricopeptide repeat-containing protein,...    78   6e-13
emb|CBI26532.3| unnamed protein product [Vitis vinifera]               78   8e-13
ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat...    78   8e-13
ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat...    76   3e-12
ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea ma...    72   4e-11

>ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527472|gb|EEF29603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 487

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 12/105 (11%)
 Frame = +1

Query: 1   AERHLKLMEMKGFKSNFVASNCLLNGLCQ------AMKVFGRMEYKDDFTYS------CK 144
           A RH++ M M GF S  VA NC+++GLC+      A+K+F  M+ +D FTYS      CK
Sbjct: 371 ARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFESMKMRDSFTYSSLVHNLCK 430

Query: 145 AKQFFAAARLIKTSLIEDVKVLKSAQKATVFGLRSTGYKREASQL 279
             +F  A++L+ + L   +K+L SAQ+  + GLR +G+++EA +L
Sbjct: 431 NGRFHRASKLLLSCLRSGMKILPSAQRVVISGLRYSGFQKEARKL 475


>emb|CBI26532.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 12/105 (11%)
 Frame = +1

Query: 1   AERHLKLMEMKGFKSNFVASNCLLNGLCQ------AMKVFGRMEYKDDFTYS------CK 144
           A RHLK M   GF S  VA NC+++GLC+      A+K+F  ME KD FTYS      CK
Sbjct: 325 ALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVHNLCK 384

Query: 145 AKQFFAAARLIKTSLIEDVKVLKSAQKATVFGLRSTGYKREASQL 279
           A+++  A+RL+   L   +K+L++ Q++ + GL  +GY  EA +L
Sbjct: 385 ARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSGYTSEARRL 429


>ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Vitis vinifera]
          Length = 457

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 12/105 (11%)
 Frame = +1

Query: 1   AERHLKLMEMKGFKSNFVASNCLLNGLCQ------AMKVFGRMEYKDDFTYS------CK 144
           A RHLK M   GF S  VA NC+++GLC+      A+K+F  ME KD FTYS      CK
Sbjct: 341 ALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVHNLCK 400

Query: 145 AKQFFAAARLIKTSLIEDVKVLKSAQKATVFGLRSTGYKREASQL 279
           A+++  A+RL+   L   +K+L++ Q++ + GL  +GY  EA +L
Sbjct: 401 ARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSGYTSEARRL 445


>ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 12/105 (11%)
 Frame = +1

Query: 1   AERHLKLMEMKGFKSNFVASNCLLNGLCQA------MKVFGRMEYKDDFTYS------CK 144
           A+RHL  M   GF SN VA NC L+GL +A      +++F  ME KD FTY+      C+
Sbjct: 346 AQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKDSFTYTIVVHNLCR 405

Query: 145 AKQFFAAARLIKTSLIEDVKVLKSAQKATVFGLRSTGYKREASQL 279
           A++F  A++++ + L    +VL++ Q+A + GLRS GY  EA ++
Sbjct: 406 ARRFLCASKVLVSCLKCGYQVLRATQRAVIVGLRSIGYANEARKV 450


>ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
           gi|238006488|gb|ACR34279.1| unknown [Zea mays]
           gi|413925463|gb|AFW65395.1| hypothetical protein
           ZEAMMB73_565010 [Zea mays]
          Length = 462

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 12/101 (11%)
 Frame = +1

Query: 1   AERHLKLMEMKGFKSNFVASNCLLNGLCQ------AMKVFGRMEYKDDFTYS------CK 144
           AE+ +  MEM G +SN VA NCL++ LC+      A+K+   M+ KDDF+Y+      CK
Sbjct: 346 AEKQIWSMEMMGMQSNVVAYNCLIDALCKCHEVDAAIKILHSMKLKDDFSYTSLVHGLCK 405

Query: 145 AKQFFAAARLIKTSLIEDVKVLKSAQKATVFGLRSTGYKRE 267
             ++  A++ ++  L E   VL SA++A + GLRS G+K +
Sbjct: 406 VGRYHMASKFLRICLHEGNNVLASAKRAVISGLRSAGFKND 446