BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039550
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321943.1| f-box family protein [Populus trichocarpa] g...    75   4e-12
dbj|BAD94953.1| hypothetical protein [Arabidopsis thaliana]            71   1e-10
ref|NP_175273.1| F-box/RNI-like/FBD-like domain-containing prote...    70   1e-10
sp|Q56XW8.2|FBL30_ARATH RecName: Full=F-box/LRR-repeat protein A...    70   1e-10
gb|AFK40721.1| unknown [Lotus japonicus]                               67   2e-09

>ref|XP_002321943.1| f-box family protein [Populus trichocarpa]
           gi|222868939|gb|EEF06070.1| f-box family protein
           [Populus trichocarpa]
          Length = 360

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
 Frame = +2

Query: 119 DNEEHEGRTI----SVDRISGIPDSLLHKILSLVDMEIAVKTSIFGRRWRNLWASLPTFN 286
           +NEE + R+     ++DR+S +PDS++HKILSLVD+  AV+TS+  +RWR LW SL   N
Sbjct: 2   ENEEDKARSSCRSENIDRLSDLPDSIIHKILSLVDLRCAVQTSVLSKRWRFLWTSLTDLN 61

Query: 287 FDSRIVNKGLETGRSARFVQFVNEVFIQHDNSDIQKFRLF 406
           F+       ++      F +FV+ V    ++S++ K +L+
Sbjct: 62  FNGTC----MDFTNFVTFNRFVSRVLSTREDSNVYKIQLY 97


>dbj|BAD94953.1| hypothetical protein [Arabidopsis thaliana]
          Length = 487

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +2

Query: 140 RTISVDRISGIPDSLLHKILSLVDMEIAVKTSIFGRRWRNLWASLPTFNFDSRIV---NK 310
           RT   D IS +PD +L KILSL+  ++A  TS+  +RWRNL   +    FD  +V   N+
Sbjct: 5   RTSPRDSISNLPDEILGKILSLLPTKVAASTSVLSKRWRNLLGLVDNLCFDESMVVYPNE 64

Query: 311 GLETGRSARFVQFVNEVFIQHDNSDIQKFRLFYDEKYD 424
             ET  S RF  FV++ F    NS I+KF L    KY+
Sbjct: 65  EEETSGSLRFCDFVDKTFALLSNSHIEKFSLSRVYKYN 102


>ref|NP_175273.1| F-box/RNI-like/FBD-like domain-containing protein [Arabidopsis
           thaliana] gi|5733869|gb|AAD49757.1|AC007932_5 Contains
           F-box domain PF|00646 [Arabidopsis thaliana]
           gi|332194164|gb|AEE32285.1| F-box/RNI-like/FBD-like
           domain-containing protein [Arabidopsis thaliana]
          Length = 513

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +2

Query: 140 RTISVDRISGIPDSLLHKILSLVDMEIAVKTSIFGRRWRNLWASLPTFNFDSRIV---NK 310
           RT   D IS +PD +L KILSL+  ++A  TS+  +RWRNL   +    FD  +V   N+
Sbjct: 5   RTSPRDSISNLPDEILGKILSLLPTKVAASTSVLSKRWRNLLGLVDNLCFDESMVVYPNE 64

Query: 311 GLETGRSARFVQFVNEVFIQHDNSDIQKFRLFYDEKYD 424
             ET  S RF  FV++ F    NS I+KF L    KY+
Sbjct: 65  EEETSGSLRFCDFVDKTFALLSNSHIKKFSLSRVYKYN 102


>sp|Q56XW8.2|FBL30_ARATH RecName: Full=F-box/LRR-repeat protein At1g48400
          Length = 487

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +2

Query: 140 RTISVDRISGIPDSLLHKILSLVDMEIAVKTSIFGRRWRNLWASLPTFNFDSRIV---NK 310
           RT   D IS +PD +L KILSL+  ++A  TS+  +RWRNL   +    FD  +V   N+
Sbjct: 5   RTSPRDSISNLPDEILGKILSLLPTKVAASTSVLSKRWRNLLGLVDNLCFDESMVVYPNE 64

Query: 311 GLETGRSARFVQFVNEVFIQHDNSDIQKFRLFYDEKYD 424
             ET  S RF  FV++ F    NS I+KF L    KY+
Sbjct: 65  EEETSGSLRFCDFVDKTFALLSNSHIKKFSLSRVYKYN 102


>gb|AFK40721.1| unknown [Lotus japonicus]
          Length = 394

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +2

Query: 155 DRISGIPDSLLHKILSLVDMEIAVKTSIFGRRWRNLWASLPTFNFDSRIVNKGLETGRSA 334
           DR S +PD +L  ILSL+  + AV TSI  +RW  LW S+PT +FD   +  G E    A
Sbjct: 8   DRFSSLPDPILCHILSLLTTKEAVTTSILSKRWIPLWRSVPTLDFDDSNLYGGDEV--YA 65

Query: 335 RFVQFVNEVFIQHD-NSDIQKFRLFYDEK 418
           RFV+ V +V +  D N  I+KFRL   E+
Sbjct: 66  RFVEAVYKVILARDFNQPIKKFRLVLTER 94