BLASTX nr result
ID: Coptis24_contig00039542
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039542
(419 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 72 9e-22
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana] 73 2e-21
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S... 74 6e-21
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 64 7e-21
gb|EEE50691.1| hypothetical protein OsJ_30951 [Oryza sativa Japo... 76 2e-20
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 71.6 bits (174), Expect(3) = 9e-22
Identities = 35/72 (48%), Positives = 43/72 (59%)
Frame = -3
Query: 417 HKLNSMKKHKQGWCAIKLDMVKAYNRVEWPFIAQILHKLGFTAKWCQLIDFCIPTVQYNI 238
H L + K + AIK DM KAY++VEW FI +L K+GF KW I +CI TVQY +
Sbjct: 342 HGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKV 401
Query: 237 LFNGIPPQTITP 202
L NG P I P
Sbjct: 402 LINGQPKGLIIP 413
Score = 47.4 bits (111), Expect(3) = 9e-22
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = -1
Query: 173 PTVTYLFIILAEALSRLFNKAELSHSISSLKIARRAPGITHMMYADDLIVFSKA 12
P YLFI+ E L KAE + I+ +K+A +P ++H+++ADD + F KA
Sbjct: 422 PLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKA 475
Score = 29.3 bits (64), Expect(3) = 9e-22
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 202 VPSKGIRQGDPLSP 161
+P +G+RQGDPLSP
Sbjct: 412 IPERGLRQGDPLSP 425
>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
Length = 1023
Score = 72.8 bits (177), Expect(3) = 2e-21
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = -3
Query: 417 HKLNSMKKHKQGWCAIKLDMVKAYNRVEWPFIAQILHKLGFTAKWCQLIDFCIPTVQYNI 238
H L + K + AIK DM KAY+RVEW FI ++L K+GF KW I +CI TVQY +
Sbjct: 408 HGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRV 467
Query: 237 LFNGIPPQTITP 202
L NG P I P
Sbjct: 468 LLNGQPRGLIVP 479
Score = 45.1 bits (105), Expect(3) = 2e-21
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -1
Query: 173 PTVTYLFIILAEALSRLFNKAELSHSISSLKIARRAPGITHMMYADDLIVFSKA 12
P YLFI+ E L KAE I+ +K+A +P ++H+++A+D + F KA
Sbjct: 488 PLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKA 541
Score = 29.6 bits (65), Expect(3) = 2e-21
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2
Query: 202 VPSKGIRQGDPLSP 161
VP +G+RQGDPLSP
Sbjct: 478 VPKRGLRQGDPLSP 491
>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
gi|241926916|gb|EES00061.1| hypothetical protein
SORBIDRAFT_03g001780 [Sorghum bicolor]
Length = 631
Score = 73.9 bits (180), Expect(2) = 6e-21
Identities = 37/72 (51%), Positives = 44/72 (61%)
Frame = -3
Query: 417 HKLNSMKKHKQGWCAIKLDMVKAYNRVEWPFIAQILHKLGFTAKWCQLIDFCIPTVQYNI 238
H L S+KK G AIKLDM KAY+RVEW F+ ++ K+GF KW QLI C+ TV Y I
Sbjct: 139 HHLKSIKKGAGGLAAIKLDMSKAYDRVEWSFLENMMRKMGFDEKWVQLIMKCVTTVTYKI 198
Query: 237 LFNGIPPQTITP 202
N Q I P
Sbjct: 199 KVNDSYTQKIFP 210
Score = 51.6 bits (122), Expect(2) = 6e-21
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = -1
Query: 173 PTVTYLFIILAEALSRLFNKAELSHSISSLKIARRAPGITHMMYADDLIVFSKA 12
P YLFII AE LS + KAE I +KI R AP + H+ +ADD ++ +A
Sbjct: 219 PLSPYLFIICAEGLSAMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRA 272
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 64.3 bits (155), Expect(3) = 7e-21
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = -3
Query: 417 HKLNSMKKHKQGWCAIKLDMVKAYNRVEWPFIAQILHKLGFTAKWCQLIDFCIPTVQYNI 238
H + +K G CA+KLDM KAY+RVEW F+ +++ K+GF W + CI +V +
Sbjct: 561 HAMKRKDANKNGVCALKLDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTF 620
Query: 237 LFNGIPPQTITP 202
NG+ +++P
Sbjct: 621 NVNGVVEGSLSP 632
Score = 52.0 bits (123), Expect(3) = 7e-21
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = -1
Query: 173 PTVTYLFIILAEALSRLFNKAELSHSISSLKIARRAPGITHMMYADDLIVFSKAALQ 3
P YLF++ A+A S L +KA I +I R AP ++H+ +ADD I+F+KA++Q
Sbjct: 641 PISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSILFTKASVQ 697
Score = 28.9 bits (63), Expect(3) = 7e-21
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2
Query: 199 PSKGIRQGDPLSP 161
PS+G+RQGDP+SP
Sbjct: 632 PSRGLRQGDPISP 644
>gb|EEE50691.1| hypothetical protein OsJ_30951 [Oryza sativa Japonica Group]
Length = 697
Score = 76.3 bits (186), Expect(2) = 2e-20
Identities = 36/72 (50%), Positives = 46/72 (63%)
Frame = -3
Query: 417 HKLNSMKKHKQGWCAIKLDMVKAYNRVEWPFIAQILHKLGFTAKWCQLIDFCIPTVQYNI 238
H L + + K G+ AIKLDM KAY+RVEWPF+ +L +LGF KW +LI C+ TV Y I
Sbjct: 79 HFLQNKRNGKDGYAAIKLDMSKAYDRVEWPFLLHMLRRLGFDEKWNRLIMNCVTTVNYKI 138
Query: 237 LFNGIPPQTITP 202
NG + I P
Sbjct: 139 KVNGDYTEVIKP 150
Score = 47.8 bits (112), Expect(2) = 2e-20
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = -1
Query: 173 PTVTYLFIILAEALSRLFNKAELSHSISSLKIARRAPGITHMMYADDLIVFSKA 12
P YLF+I AEA S AE S + L+I R AP +TH+ +ADD ++ KA
Sbjct: 159 PLSPYLFVICAEAFSAAIQAAEGSKRLCGLRICRGAPILTHLFFADDSLLLLKA 212