BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039530
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containi...   124   1e-26
emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]   124   1e-26
ref|XP_002527042.1| pentatricopeptide repeat-containing protein,...   115   4e-24
ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22
ref|NP_198063.1| pentatricopeptide repeat-containing protein [Ar...   108   3e-22

>ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  124 bits (310), Expect = 1e-26
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           DVVV+++ VGMYAKCN+F+ AI LF+EMPE+DV +WN VISCYYQDGQPEK L++FE MK
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 71  SLGFEPDSVTFTTVFSACTKL 9
             GF+PDSVT TTV S+C +L
Sbjct: 200 VSGFKPDSVTLTTVISSCARL 220



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 32/77 (41%), Positives = 51/77 (66%)
 Frame = -3

Query: 245 VVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMKSL 66
           VV+ A++ MYAKC   D A+ +FN++PE+D  +W ++I+ Y   GQ  + L +FE+M+  
Sbjct: 445 VVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQS 504

Query: 65  GFEPDSVTFTTVFSACT 15
             +PD VTF  + SAC+
Sbjct: 505 DAKPDKVTFLAILSACS 521



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 51/82 (62%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D+ V ++++ +Y KC     A  +F  MP+ +V +WN +IS Y + G   + L +F  M+
Sbjct: 342 DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 401

Query: 71  SLGFEPDSVTFTTVFSACTKLS 6
             G +PD++TFT+V  AC++L+
Sbjct: 402 KAGVKPDAITFTSVLPACSQLA 423



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 25/80 (31%), Positives = 46/80 (57%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D  V +A+V MY KC   ++A  +F ++  K+V +WN++I+ Y   G  +  +++F RM 
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 300

Query: 71  SLGFEPDSVTFTTVFSACTK 12
             G  P   T +++  AC++
Sbjct: 301 EEGIRPTLTTLSSILMACSR 320


>emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  124 bits (310), Expect = 1e-26
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           DVVV+++ VGMYAKCN+F+ AI LF+EMPE+DV +WN VISCYYQDGQPEK L++FE MK
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 71  SLGFEPDSVTFTTVFSACTKL 9
             GF+PDSVT TTV S+C +L
Sbjct: 392 VSGFKPDSVTLTTVISSCARL 412



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 32/77 (41%), Positives = 51/77 (66%)
 Frame = -3

Query: 245 VVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMKSL 66
           VV+ A++ MYAKC   D A+ +FN++PE+D  +W ++I+ Y   GQ  + L +FE+M+  
Sbjct: 637 VVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQS 696

Query: 65  GFEPDSVTFTTVFSACT 15
             +PD VTF  + SAC+
Sbjct: 697 DAKPDKVTFLAILSACS 713



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 51/82 (62%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D+ V ++++ +Y KC     A  +F  MP+ +V +WN +IS Y + G   + L +F  M+
Sbjct: 534 DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 593

Query: 71  SLGFEPDSVTFTTVFSACTKLS 6
             G +PD++TFT+V  AC++L+
Sbjct: 594 KAGVKPDAITFTSVLPACSQLA 615



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 25/80 (31%), Positives = 46/80 (57%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D  V +A+V MY KC   ++A  +F ++  K+V +WN++I+ Y   G  +  +++F RM 
Sbjct: 433 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 492

Query: 71  SLGFEPDSVTFTTVFSACTK 12
             G  P   T +++  AC++
Sbjct: 493 EEGIRPTLTTLSSILMACSR 512


>ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533604|gb|EEF35342.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 520

 Score =  115 bits (288), Expect = 4e-24
 Identities = 51/81 (62%), Positives = 66/81 (81%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D+VV +++V ++AKCNLF  AI LF+EMPE+DV  WNTVISCYYQDG+ EK L+MF +M+
Sbjct: 64  DIVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMR 123

Query: 71  SLGFEPDSVTFTTVFSACTKL 9
             GFEP+SVT TTV S+C +L
Sbjct: 124 DSGFEPNSVTLTTVISSCARL 144



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 32/77 (41%), Positives = 51/77 (66%)
 Frame = -3

Query: 245 VVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMKSL 66
           +V+ A++ MYAKC   D A+ +FN++PE+D+ +W ++IS Y   GQ  + L +FE ++  
Sbjct: 369 IVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQS 428

Query: 65  GFEPDSVTFTTVFSACT 15
              PD+VTF  V SAC+
Sbjct: 429 KASPDAVTFLAVLSACS 445



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 30/82 (36%), Positives = 50/82 (60%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D+ V + ++ +Y KC     A  +F  +P+ +V  WN +IS Y   G   K LDM++ MK
Sbjct: 266 DIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEMK 325

Query: 71  SLGFEPDSVTFTTVFSACTKLS 6
               +PD+VTF+++ SAC++L+
Sbjct: 326 IASVKPDAVTFSSILSACSQLA 347



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/80 (33%), Positives = 47/80 (58%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D  V +A+V MY K    DLA  +F +MP+K + AWN++I+ Y      ++ +++F RM 
Sbjct: 165 DGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMN 224

Query: 71  SLGFEPDSVTFTTVFSACTK 12
             G +P   T +++  AC++
Sbjct: 225 MEGTKPTVTTLSSILLACSR 244


>ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/81 (61%), Positives = 62/81 (76%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D+VV +++VGMYAKCN F+ AI LFNEMPEKDV  WNTVISCYYQ G  ++ L+ F  M+
Sbjct: 140 DIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMR 199

Query: 71  SLGFEPDSVTFTTVFSACTKL 9
             GFEP+SVT TT  S+C +L
Sbjct: 200 RFGFEPNSVTITTAISSCARL 220



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 29/82 (35%), Positives = 53/82 (64%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           DV + ++++ +Y KC   +LA  +F  +P+  V +WN +IS Y  +G+  + L +F  M+
Sbjct: 342 DVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR 401

Query: 71  SLGFEPDSVTFTTVFSACTKLS 6
               EPD++TFT+V +AC++L+
Sbjct: 402 KSYVEPDAITFTSVLTACSQLA 423



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = -3

Query: 245 VVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMKSL 66
           VV+ A++ MYAKC   D A  +F  +P++D+ +W ++I+ Y   GQ    L++F  M   
Sbjct: 445 VVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQS 504

Query: 65  GFEPDSVTFTTVFSAC 18
             +PD VTF  + SAC
Sbjct: 505 NMKPDRVTFLAILSAC 520



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/80 (35%), Positives = 48/80 (60%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D  + +A+V MY KC   ++AI +F +MP+K V AWN++IS Y   G     + +F+RM 
Sbjct: 241 DSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMY 300

Query: 71  SLGFEPDSVTFTTVFSACTK 12
           + G +P   T +++   C++
Sbjct: 301 NEGVKPTLTTLSSLIMVCSR 320


>ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635756|sp|O04659.2|PP398_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g27110 gi|332006268|gb|AED93651.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  108 bits (271), Expect = 3e-22
 Identities = 48/81 (59%), Positives = 67/81 (82%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           DVVV +++VGMYAK NLF+ ++ +F+EMPE+DV +WNTVISC+YQ G+ EK L++F RM+
Sbjct: 141 DVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRME 200

Query: 71  SLGFEPDSVTFTTVFSACTKL 9
           S GFEP+SV+ T   SAC++L
Sbjct: 201 SSGFEPNSVSLTVAISACSRL 221



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 32/78 (41%), Positives = 48/78 (61%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D ++++A++ MY+KC     A  +FN +P+KDV +W  +IS Y   GQP + L  F+ M+
Sbjct: 444 DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQ 503

Query: 71  SLGFEPDSVTFTTVFSAC 18
             G +PD VT   V SAC
Sbjct: 504 KFGLKPDGVTLLAVLSAC 521



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/82 (34%), Positives = 52/82 (63%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D+ V  +++ +Y KC   +LA  +F++  +    +WN +IS Y   G   K ++++++M 
Sbjct: 343 DIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMV 402

Query: 71  SLGFEPDSVTFTTVFSACTKLS 6
           S+G +PD VTFT+V  AC++L+
Sbjct: 403 SVGVKPDVVTFTSVLPACSQLA 424



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 45/80 (56%)
 Frame = -3

Query: 251 DVVVVNAIVGMYAKCNLFDLAICLFNEMPEKDVPAWNTVISCYYQDGQPEKVLDMFERMK 72
           D  V +A+V MY KC+  ++A  +F +MP K + AWN++I  Y   G  +  +++  RM 
Sbjct: 242 DEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMI 301

Query: 71  SLGFEPDSVTFTTVFSACTK 12
             G  P   T T++  AC++
Sbjct: 302 IEGTRPSQTTLTSILMACSR 321