BLASTX nr result
ID: Coptis24_contig00039529
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039529 (291 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002515948.1| pentatricopeptide repeat-containing protein,... 161 6e-38 ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containi... 158 5e-37 emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera] 156 1e-36 ref|XP_003594555.1| Pentatricopeptide repeat-containing protein ... 154 6e-36 ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containi... 152 2e-35 >ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 706 Score = 161 bits (407), Expect = 6e-38 Identities = 75/97 (77%), Positives = 85/97 (87%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 +KV+QA+KVF DMK+KHCEPDEYTYTIMIRM G+ GK DE LALF+EML KGC+PN IAY Sbjct: 91 QKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAY 150 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 NTMIQALA +RMVDK I LFSKM+E C+PNEFTYSV Sbjct: 151 NTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSV 187 Score = 77.8 bits (190), Expect = 9e-13 Identities = 35/96 (36%), Positives = 55/96 (57%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 KV +A K+F +++ C+PD +Y +I +GK G DE F+EM KG P+ + Y+ Sbjct: 334 KVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYS 393 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 T+I+ K V+ LF +M+ GC PN TY++ Sbjct: 394 TLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNI 429 Score = 73.9 bits (180), Expect = 1e-11 Identities = 33/95 (34%), Positives = 55/95 (57%) Frame = -1 Query: 285 VEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNT 106 +++A+ F +M+ K PD TY+ +I GKT K + LF EML +GC PN + YN Sbjct: 370 LDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNI 429 Query: 105 MIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 ++ L ++ + + L++K+ + G P+ TYSV Sbjct: 430 LLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSV 464 Score = 69.7 bits (169), Expect = 2e-10 Identities = 33/96 (34%), Positives = 53/96 (55%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 +++ Y ++ MK PD +TY I+I G+ GK E + +F+E+ C P+ I+Y Sbjct: 298 KQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISY 357 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 N++I L KN +D+ F +M E G P+ TYS Sbjct: 358 NSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYS 393 Score = 63.9 bits (154), Expect = 1e-08 Identities = 26/93 (27%), Positives = 51/93 (54%) Frame = -1 Query: 282 EQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNTM 103 + ++V+ +MKRK D + + +++ + K K D+ +F++M K C P++ Y M Sbjct: 59 DNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIM 118 Query: 102 IQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 I+ + +D+ + LF +M+ GC PN Y+ Sbjct: 119 IRMTGRIGKLDESLALFEEMLNKGCSPNLIAYN 151 >ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Vitis vinifera] Length = 990 Score = 158 bits (399), Expect = 5e-37 Identities = 76/96 (79%), Positives = 80/96 (83%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 KV+Q Y VF DMKRKHCEPDEYTYTIMIRM GK GKADE L LFQEM KG PN IAYN Sbjct: 92 KVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYN 151 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 TMIQALA NRMVDK IFLFSKM+EN C+PN FT+SV Sbjct: 152 TMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSV 187 Score = 78.6 bits (192), Expect = 5e-13 Identities = 33/96 (34%), Positives = 57/96 (59%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 +VE+A K+F +++ C+PD ++ +I +GK G DE F+EM +G +P+ + Y+ Sbjct: 334 RVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYS 393 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 T+I+ K V+ LF +M+ GC PN TY++ Sbjct: 394 TLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNI 429 Score = 74.3 bits (181), Expect = 1e-11 Identities = 31/95 (32%), Positives = 56/95 (58%) Frame = -1 Query: 285 VEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNT 106 +++A+ F +M+ + PD TY+ +I GKT K + LF EML +GC+PN + YN Sbjct: 370 IDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNI 429 Query: 105 MIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 ++ L ++ + + L++K+ + G P+ TY+V Sbjct: 430 LLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAV 464 Score = 69.3 bits (168), Expect = 3e-10 Identities = 30/96 (31%), Positives = 54/96 (56%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 +K + ++ MK+ PD ++Y I+I G+ G+ +E + +F+E+ C P+ I++ Sbjct: 298 KKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 357 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 N++I L KN +D+ F +M E G P+ TYS Sbjct: 358 NSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYS 393 >emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera] Length = 790 Score = 156 bits (395), Expect = 1e-36 Identities = 75/96 (78%), Positives = 80/96 (83%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 +V+Q Y VF DMKRKHCEPDEYTYTIMIRM GK GKADE L LFQEM KG PN IAYN Sbjct: 307 EVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYN 366 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 TMIQALA NRMVDK IFLFSKM+EN C+PN FT+SV Sbjct: 367 TMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSV 402 Score = 78.6 bits (192), Expect = 5e-13 Identities = 33/96 (34%), Positives = 57/96 (59%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 +VE+A K+F +++ C+PD ++ +I +GK G DE F+EM +G +P+ + Y+ Sbjct: 551 RVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYS 610 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 T+I+ K V+ LF +M+ GC PN TY++ Sbjct: 611 TLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNI 646 Score = 74.3 bits (181), Expect = 1e-11 Identities = 31/95 (32%), Positives = 56/95 (58%) Frame = -1 Query: 285 VEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNT 106 +++A+ F +M+ + PD TY+ +I GKT K + LF EML +GC+PN + YN Sbjct: 587 IDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNI 646 Query: 105 MIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 ++ L ++ + + L++K+ + G P+ TY+V Sbjct: 647 LLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAV 681 Score = 69.3 bits (168), Expect = 3e-10 Identities = 30/96 (31%), Positives = 54/96 (56%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 +K + ++ MK+ PD ++Y I+I G+ G+ +E + +F+E+ C P+ I++ Sbjct: 515 KKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 574 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 N++I L KN +D+ F +M E G P+ TYS Sbjct: 575 NSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYS 610 >ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 639 Score = 154 bits (390), Expect = 6e-36 Identities = 73/97 (75%), Positives = 81/97 (83%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 +KV++AYKVF DMKR+HCEPD +TYTIMIRM GK GK DE LALFQ ML KG N IAY Sbjct: 237 QKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAY 296 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 NTMI+ALAK RM DK + LFSKM+ENGCQPNEFTYSV Sbjct: 297 NTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSV 333 Score = 81.6 bits (200), Expect = 6e-14 Identities = 35/96 (36%), Positives = 56/96 (58%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 +V+ A K+F +++ +C+PD +Y +I +GK G DE F+EM KG P+ + Y+ Sbjct: 480 RVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYS 539 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 T+I+ K V+ LF +MI GC PN TY++ Sbjct: 540 TLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNI 575 Score = 76.3 bits (186), Expect = 3e-12 Identities = 32/95 (33%), Positives = 57/95 (60%) Frame = -1 Query: 285 VEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNT 106 V++A+ F +M+ K PD TY+ +I GKT K + +LF EM+ +GC+PN + YN Sbjct: 516 VDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNI 575 Query: 105 MIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 ++ L ++ + + L++K+ + G P+ TY+V Sbjct: 576 LLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAV 610 Score = 72.0 bits (175), Expect = 5e-11 Identities = 33/96 (34%), Positives = 54/96 (56%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 ++V + ++ MK+ PD +TY I+I G+ G+ D + +F+E+ C P+ I+Y Sbjct: 444 KQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISY 503 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 N++I L KN VD+ F +M E G P+ TYS Sbjct: 504 NSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYS 539 >ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial-like [Cucumis sativus] Length = 685 Score = 152 bits (385), Expect = 2e-35 Identities = 70/97 (72%), Positives = 83/97 (85%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 E+++++YKVF DMK KHC PDEYTYTIMIRM GK G+A+E LALF+EMLTKGC PN IAY Sbjct: 283 EQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAY 342 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 NTMIQAL+K+ MVDK I LF MI+N C+PNEFTYS+ Sbjct: 343 NTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSI 379 Score = 77.4 bits (189), Expect = 1e-12 Identities = 36/96 (37%), Positives = 55/96 (57%) Frame = -1 Query: 288 KVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYN 109 KV++A +VF +++ C+PD +Y +I +GK G DE F EM KG P+ + Y+ Sbjct: 526 KVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYS 585 Query: 108 TMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 T+I+ K V+ LF +MI GC PN TY++ Sbjct: 586 TLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNI 621 Score = 73.9 bits (180), Expect = 1e-11 Identities = 32/95 (33%), Positives = 55/95 (57%) Frame = -1 Query: 285 VEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNT 106 V++A+ F +M+ K PD TY+ +I GKT K + +LF M+T+GC PN + YN Sbjct: 562 VDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNI 621 Query: 105 MIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYSV 1 ++ L + + + L++K+ E G P+ TY++ Sbjct: 622 LLDCLERAGRTAETVDLYAKLREQGLTPDSITYAI 656 Score = 70.1 bits (170), Expect = 2e-10 Identities = 33/96 (34%), Positives = 56/96 (58%) Frame = -1 Query: 291 EKVEQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAY 112 ++V + ++ MK+ PD +TY I+I +G+ GK E + +F+E+ + C P+ I+Y Sbjct: 490 KQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISY 549 Query: 111 NTMIQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 N++I L KN VD+ F +M + G P+ TYS Sbjct: 550 NSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYS 585 Score = 55.1 bits (131), Expect = 6e-06 Identities = 24/93 (25%), Positives = 48/93 (51%) Frame = -1 Query: 282 EQAYKVFADMKRKHCEPDEYTYTIMIRMIGKTGKADECLALFQEMLTKGCAPNQIAYNTM 103 ++A+ V+ +M + D + Y +++ + K + D +F++M K C P++ Y M Sbjct: 251 DRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 310 Query: 102 IQALAKNRMVDKVIFLFSKMIENGCQPNEFTYS 4 I+ K ++ + LF +M+ GC PN Y+ Sbjct: 311 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYN 343