BLASTX nr result
ID: Coptis24_contig00039500
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039500 (345 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI35789.3| unnamed protein product [Vitis vinifera] 80 2e-13 ref|XP_002263215.1| PREDICTED: RING-H2 finger protein ATL60-like... 78 7e-13 ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Rici... 78 7e-13 emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera] 78 7e-13 ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like ... 77 2e-12 >emb|CBI35789.3| unnamed protein product [Vitis vinifera] Length = 912 Score = 79.7 bits (195), Expect = 2e-13 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Frame = +1 Query: 1 SHTSMIDDYNNSNSSGSTE-RISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVED 177 S M D +++S+ S +SG +M HLYAKWFW D Sbjct: 10 SENGMGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTAD--R 67 Query: 178 ETHHYHTXXXXXXFVFAPTQDPTV-ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345 + + FVFAP QDP + A+ GLDP+++ S+PVLVF P++FKDGLECAV Sbjct: 68 GSSFGGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAV 124 >ref|XP_002263215.1| PREDICTED: RING-H2 finger protein ATL60-like [Vitis vinifera] Length = 304 Score = 78.2 bits (191), Expect = 7e-13 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Frame = +1 Query: 13 MIDDYNNSNSSGSTE-RISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHH 189 M D +++S+ S +SG +M HLYAKWFW D + Sbjct: 1 MGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTAD--RGSSF 58 Query: 190 YHTXXXXXXFVFAPTQDPTV-ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345 + FVFAP QDP + A+ GLDP+++ S+PVLVF P++FKDGLECAV Sbjct: 59 GGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAV 111 >ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Ricinus communis] gi|223526251|gb|EEF28567.1| RING-H2 finger protein ATL1M, putative [Ricinus communis] Length = 281 Score = 78.2 bits (191), Expect = 7e-13 Identities = 42/98 (42%), Positives = 53/98 (54%) Frame = +1 Query: 52 TERISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHHYHTXXXXXXFVFAP 231 T I+G +M HLYAKWFW +E+ T H+ FVF P Sbjct: 9 TVEITGRIMVIAIIILFMVVVFVLLLHLYAKWFWWR---IEEPTSPPHSRRNRRRFVFTP 65 Query: 232 TQDPTVALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345 QDP + GLD +V+RSLPV++F +DFKDGLECAV Sbjct: 66 AQDP---VRRGLDMSVLRSLPVVIFQSEDFKDGLECAV 100 >emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera] Length = 959 Score = 78.2 bits (191), Expect = 7e-13 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Frame = +1 Query: 13 MIDDYNNSNSSGSTE-RISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHH 189 M D +++S+ S +SG +M HLYAKWFW D + Sbjct: 1 MGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTAD--RGSSF 58 Query: 190 YHTXXXXXXFVFAPTQDPTV-ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345 + FVFAP QDP + A+ GLDP+++ S+PVLVF P++FKDGLECAV Sbjct: 59 GGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAV 111 >ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like [Glycine max] Length = 314 Score = 76.6 bits (187), Expect = 2e-12 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Frame = +1 Query: 28 NNSNSSGSTERISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHHYHTXXX 207 +N+ T I+G +M HLYAKWFW + H Sbjct: 5 DNAWGESDTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEE-NATPQPRHRRRR 63 Query: 208 XXXFVFAPTQDPTV--ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345 FVFAP QD + GLDP+V++SLPVLVF P+DFK+GLECAV Sbjct: 64 RRRFVFAPGQDSVIYETHQVGLDPSVLKSLPVLVFQPEDFKEGLECAV 111