BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039500
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35789.3| unnamed protein product [Vitis vinifera]               80   2e-13
ref|XP_002263215.1| PREDICTED: RING-H2 finger protein ATL60-like...    78   7e-13
ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Rici...    78   7e-13
emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]    78   7e-13
ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like ...    77   2e-12

>emb|CBI35789.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
 Frame = +1

Query: 1   SHTSMIDDYNNSNSSGSTE-RISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVED 177
           S   M D +++S+   S    +SG +M                 HLYAKWFW    D   
Sbjct: 10  SENGMGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTAD--R 67

Query: 178 ETHHYHTXXXXXXFVFAPTQDPTV-ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345
            +    +      FVFAP QDP + A+  GLDP+++ S+PVLVF P++FKDGLECAV
Sbjct: 68  GSSFGGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAV 124


>ref|XP_002263215.1| PREDICTED: RING-H2 finger protein ATL60-like [Vitis vinifera]
          Length = 304

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
 Frame = +1

Query: 13  MIDDYNNSNSSGSTE-RISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHH 189
           M D +++S+   S    +SG +M                 HLYAKWFW    D    +  
Sbjct: 1   MGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTAD--RGSSF 58

Query: 190 YHTXXXXXXFVFAPTQDPTV-ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345
             +      FVFAP QDP + A+  GLDP+++ S+PVLVF P++FKDGLECAV
Sbjct: 59  GGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAV 111


>ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Ricinus communis]
           gi|223526251|gb|EEF28567.1| RING-H2 finger protein
           ATL1M, putative [Ricinus communis]
          Length = 281

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 42/98 (42%), Positives = 53/98 (54%)
 Frame = +1

Query: 52  TERISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHHYHTXXXXXXFVFAP 231
           T  I+G +M                 HLYAKWFW     +E+ T   H+      FVF P
Sbjct: 9   TVEITGRIMVIAIIILFMVVVFVLLLHLYAKWFWWR---IEEPTSPPHSRRNRRRFVFTP 65

Query: 232 TQDPTVALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345
            QDP   +  GLD +V+RSLPV++F  +DFKDGLECAV
Sbjct: 66  AQDP---VRRGLDMSVLRSLPVVIFQSEDFKDGLECAV 100


>emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]
          Length = 959

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
 Frame = +1

Query: 13  MIDDYNNSNSSGSTE-RISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHH 189
           M D +++S+   S    +SG +M                 HLYAKWFW    D    +  
Sbjct: 1   MGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTAD--RGSSF 58

Query: 190 YHTXXXXXXFVFAPTQDPTV-ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345
             +      FVFAP QDP + A+  GLDP+++ S+PVLVF P++FKDGLECAV
Sbjct: 59  GGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAV 111


>ref|XP_003529860.1| PREDICTED: RING-H2 finger protein ATL3-like [Glycine max]
          Length = 314

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
 Frame = +1

Query: 28  NNSNSSGSTERISGNVMXXXXXXXXXXXXXXXXXHLYAKWFWGPRGDVEDETHHYHTXXX 207
           +N+     T  I+G +M                 HLYAKWFW    +        H    
Sbjct: 5   DNAWGESDTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEE-NATPQPRHRRRR 63

Query: 208 XXXFVFAPTQDPTV--ALHTGLDPAVVRSLPVLVFHPDDFKDGLECAV 345
              FVFAP QD  +      GLDP+V++SLPVLVF P+DFK+GLECAV
Sbjct: 64  RRRFVFAPGQDSVIYETHQVGLDPSVLKSLPVLVFQPEDFKEGLECAV 111