BLASTX nr result
ID: Coptis24_contig00039490
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039490
(263 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002883803.1| pentatricopeptide repeat-containing protein ... 84 1e-14
ref|NP_178983.1| pentatricopeptide repeat-containing protein [Ar... 83 3e-14
ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,... 80 2e-13
ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi... 79 4e-13
>ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297329643|gb|EFH60062.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 697
Score = 84.0 bits (206), Expect = 1e-14
Identities = 44/88 (50%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
DMYSKCG V A+ +F+E + R++VSWNSL+T Y QNG +EA+ +FQ ML V PD
Sbjct: 195 DMYSKCGNVNDAQQVFDE-MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDE 253
Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3
+T+A+VI ACA L+ +++ Q VH+ ++K
Sbjct: 254 VTLASVISACASLSAIKVGQEVHARVVK 281
Score = 62.4 bits (150), Expect = 4e-08
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = -1
Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
Y+ + AR++F + + R++VSWN+L+ GY+QNG + EA+ LF + R+ V P T
Sbjct: 330 YAMAASTKAARLMFTK-MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYT 388
Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3
AN++ ACA LADL + H ++K
Sbjct: 389 FANILKACADLADLHLGMQAHVHVLK 414
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRML-RDVNPDS 87
DMY KCG VE ++F + + R VSWN+++ G++QNG EA+ LF+ ML PD
Sbjct: 435 DMYVKCGCVEEGYLVFRKMME-RDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDH 493
Query: 86 ITIANVIPAC 57
IT+ V+ AC
Sbjct: 494 ITMIGVLSAC 503
>ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g13600 gi|4558664|gb|AAD22682.1| hypothetical protein
[Arabidopsis thaliana] gi|330251150|gb|AEC06244.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 697
Score = 82.8 bits (203), Expect = 3e-14
Identities = 43/88 (48%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
DMYSKCG V A+ +F+E + R++VSWNSL+T + QNG +EA+ +FQ ML V PD
Sbjct: 195 DMYSKCGNVNDAQRVFDE-MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253
Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3
+T+A+VI ACA L+ +++ Q VH ++K
Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVK 281
Score = 59.3 bits (142), Expect = 3e-07
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = -1
Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
Y+ + AR++F + + R++VSWN+L+ GY+QNG + EA+ LF + R+ V P +
Sbjct: 330 YAMAASTKAARLMFTK-MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3
AN++ ACA LA+L + H ++K
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLK 414
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
DMY KCG VE ++F + + R VSWN+++ G++QNG EA+ LF+ ML PD
Sbjct: 435 DMYVKCGCVEEGYLVFRKMME-RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493
Query: 86 ITIANVIPAC 57
IT+ V+ AC
Sbjct: 494 ITMIGVLSAC 503
>ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 79.7 bits (195), Expect = 2e-13
Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLR-DVNPDS 87
DMYSKCG VE A+ +F+E + RS VSWNSL+T Y QNG EA+ +F M++ V PD
Sbjct: 194 DMYSKCGRVEYAQSVFDE-MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252
Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3
+T+A+V+ ACA ++ ++ Q +H+ ++K
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVK 280
Score = 62.8 bits (151), Expect = 3e-08
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = -1
Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
Y+K +V+ AR +F + + +++WN+L+ G +QNG + EA+ LF+ + R+ V P T
Sbjct: 329 YAKASKVKVARYMFSNMMV-KDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYT 387
Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3
N++ ACA LADLQ+ + HS ++K
Sbjct: 388 FGNLLNACANLADLQLGRQAHSHVLK 413
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRDVN-PDS 87
DMY KCG VE +F+ L + VSWN+++ GY+QNG +A+ +F +ML PD
Sbjct: 434 DMYMKCGSVENGCRVFQHMLE-KDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDH 492
Query: 86 ITIANVIPACA 54
+T+ V+ AC+
Sbjct: 493 VTMIGVLCACS 503
>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 628
Score = 79.7 bits (195), Expect = 2e-13
Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
D+YSKCG V+CA+ +F+ + R++VSWNSL+T Y QNG EA+ +F RM+ PD
Sbjct: 194 DIYSKCGFVDCAQRVFDGMME-RNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDE 252
Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3
+T+A+V+ ACA LA + +H+ ++K
Sbjct: 253 VTLASVVSACASLAAAKQGLEIHACVVK 280
Score = 69.7 bits (169), Expect = 2e-10
Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = -1
Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
Y+K V+ AR++F + + R++VSWN+L+ GY+QNG + EA+ LF+ + R+ + P T
Sbjct: 329 YAKTASVKAARLLFTKMIE-RNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYT 387
Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3
N++ ACA LADLQ+ + H+ ++K
Sbjct: 388 FGNLLNACANLADLQLGRQAHAHVLK 413
Score = 62.4 bits (150), Expect = 4e-08
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
DMY KCG VE IFE + R VSWN+++ GY+QNG +EA+ LF++ML PD
Sbjct: 434 DMYMKCGSVEEGCRIFENMVE-RDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDH 492
Query: 86 ITIANVIPACARLADLQ 36
+T+ + AC+ +Q
Sbjct: 493 VTMIGALCACSHAGLVQ 509
>ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 79.0 bits (193), Expect = 4e-13
Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
DMYSKCG VE AR+IF+ + +++VSWNS++ GY QNG +A+ +F++ML + ++P
Sbjct: 291 DMYSKCGSVETARLIFDG-MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTG 349
Query: 86 ITIANVIPACARLADLQMIQLVHSII 9
+TI + ACA L DL+ + VH +
Sbjct: 350 VTIMEALHACADLGDLERGKFVHKFV 375
Score = 68.6 bits (166), Expect = 5e-10
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 MYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLR-DVNPDSI 84
MYSKC V+ A IF L+GR+ VSWN+++ GY+QNG EA+ F M + PDS
Sbjct: 393 MYSKCKRVDIASDIFNN-LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451
Query: 83 TIANVIPACARLADLQMIQLVHSIIIK 3
T+ +VIPA A L+ + + +H +II+
Sbjct: 452 TMVSVIPALAELSVTRHAKWIHGLIIR 478
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
+MY+KC +++ A +F+ + R LVSWN+++ G+SQNG +A+ L RM + PDS
Sbjct: 190 NMYAKCRQIDDAYKMFDR-MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS 248
Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3
IT+ V+PA A + L + + +H I+
Sbjct: 249 ITLVTVLPAAADVGLLMVGKSIHGYAIR 276
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = -1
Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
DMYSKCG + AR +F+ + R +++WN+++ GY +G A+ LF +M + V P+
Sbjct: 493 DMYSKCGAIHMARKLFDM-ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPND 551
Query: 86 ITIANVIPACA 54
IT +VI AC+
Sbjct: 552 ITYLSVISACS 562