BLASTX nr result
ID: Coptis24_contig00039490
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039490 (263 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002883803.1| pentatricopeptide repeat-containing protein ... 84 1e-14 ref|NP_178983.1| pentatricopeptide repeat-containing protein [Ar... 83 3e-14 ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13 ref|XP_002517667.1| pentatricopeptide repeat-containing protein,... 80 2e-13 ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi... 79 4e-13 >ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 697 Score = 84.0 bits (206), Expect = 1e-14 Identities = 44/88 (50%), Positives = 64/88 (72%), Gaps = 1/88 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 DMYSKCG V A+ +F+E + R++VSWNSL+T Y QNG +EA+ +FQ ML V PD Sbjct: 195 DMYSKCGNVNDAQQVFDE-MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDE 253 Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3 +T+A+VI ACA L+ +++ Q VH+ ++K Sbjct: 254 VTLASVISACASLSAIKVGQEVHARVVK 281 Score = 62.4 bits (150), Expect = 4e-08 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Frame = -1 Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81 Y+ + AR++F + + R++VSWN+L+ GY+QNG + EA+ LF + R+ V P T Sbjct: 330 YAMAASTKAARLMFTK-MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYT 388 Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3 AN++ ACA LADL + H ++K Sbjct: 389 FANILKACADLADLHLGMQAHVHVLK 414 Score = 58.2 bits (139), Expect = 7e-07 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRML-RDVNPDS 87 DMY KCG VE ++F + + R VSWN+++ G++QNG EA+ LF+ ML PD Sbjct: 435 DMYVKCGCVEEGYLVFRKMME-RDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDH 493 Query: 86 ITIANVIPAC 57 IT+ V+ AC Sbjct: 494 ITMIGVLSAC 503 >ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 697 Score = 82.8 bits (203), Expect = 3e-14 Identities = 43/88 (48%), Positives = 63/88 (71%), Gaps = 1/88 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 DMYSKCG V A+ +F+E + R++VSWNSL+T + QNG +EA+ +FQ ML V PD Sbjct: 195 DMYSKCGNVNDAQRVFDE-MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253 Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3 +T+A+VI ACA L+ +++ Q VH ++K Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVK 281 Score = 59.3 bits (142), Expect = 3e-07 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Frame = -1 Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81 Y+ + AR++F + + R++VSWN+L+ GY+QNG + EA+ LF + R+ V P + Sbjct: 330 YAMAASTKAARLMFTK-MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388 Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3 AN++ ACA LA+L + H ++K Sbjct: 389 FANILKACADLAELHLGMQAHVHVLK 414 Score = 58.9 bits (141), Expect = 4e-07 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 DMY KCG VE ++F + + R VSWN+++ G++QNG EA+ LF+ ML PD Sbjct: 435 DMYVKCGCVEEGYLVFRKMME-RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493 Query: 86 ITIANVIPAC 57 IT+ V+ AC Sbjct: 494 ITMIGVLSAC 503 >ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis sativus] gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis sativus] Length = 687 Score = 79.7 bits (195), Expect = 2e-13 Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 1/88 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLR-DVNPDS 87 DMYSKCG VE A+ +F+E + RS VSWNSL+T Y QNG EA+ +F M++ V PD Sbjct: 194 DMYSKCGRVEYAQSVFDE-MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252 Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3 +T+A+V+ ACA ++ ++ Q +H+ ++K Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVK 280 Score = 62.8 bits (151), Expect = 3e-08 Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Frame = -1 Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81 Y+K +V+ AR +F + + +++WN+L+ G +QNG + EA+ LF+ + R+ V P T Sbjct: 329 YAKASKVKVARYMFSNMMV-KDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYT 387 Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3 N++ ACA LADLQ+ + HS ++K Sbjct: 388 FGNLLNACANLADLQLGRQAHSHVLK 413 Score = 56.2 bits (134), Expect = 3e-06 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRDVN-PDS 87 DMY KCG VE +F+ L + VSWN+++ GY+QNG +A+ +F +ML PD Sbjct: 434 DMYMKCGSVENGCRVFQHMLE-KDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDH 492 Query: 86 ITIANVIPACA 54 +T+ V+ AC+ Sbjct: 493 VTMIGVLCACS 503 >ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 628 Score = 79.7 bits (195), Expect = 2e-13 Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 1/88 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 D+YSKCG V+CA+ +F+ + R++VSWNSL+T Y QNG EA+ +F RM+ PD Sbjct: 194 DIYSKCGFVDCAQRVFDGMME-RNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDE 252 Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3 +T+A+V+ ACA LA + +H+ ++K Sbjct: 253 VTLASVVSACASLAAAKQGLEIHACVVK 280 Score = 69.7 bits (169), Expect = 2e-10 Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%) Frame = -1 Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81 Y+K V+ AR++F + + R++VSWN+L+ GY+QNG + EA+ LF+ + R+ + P T Sbjct: 329 YAKTASVKAARLLFTKMIE-RNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYT 387 Query: 80 IANVIPACARLADLQMIQLVHSIIIK 3 N++ ACA LADLQ+ + H+ ++K Sbjct: 388 FGNLLNACANLADLQLGRQAHAHVLK 413 Score = 62.4 bits (150), Expect = 4e-08 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 DMY KCG VE IFE + R VSWN+++ GY+QNG +EA+ LF++ML PD Sbjct: 434 DMYMKCGSVEEGCRIFENMVE-RDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDH 492 Query: 86 ITIANVIPACARLADLQ 36 +T+ + AC+ +Q Sbjct: 493 VTMIGALCACSHAGLVQ 509 >ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] Length = 821 Score = 79.0 bits (193), Expect = 4e-13 Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 1/86 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 DMYSKCG VE AR+IF+ + +++VSWNS++ GY QNG +A+ +F++ML + ++P Sbjct: 291 DMYSKCGSVETARLIFDG-MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTG 349 Query: 86 ITIANVIPACARLADLQMIQLVHSII 9 +TI + ACA L DL+ + VH + Sbjct: 350 VTIMEALHACADLGDLERGKFVHKFV 375 Score = 68.6 bits (166), Expect = 5e-10 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Frame = -1 Query: 260 MYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLR-DVNPDSI 84 MYSKC V+ A IF L+GR+ VSWN+++ GY+QNG EA+ F M + PDS Sbjct: 393 MYSKCKRVDIASDIFNN-LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451 Query: 83 TIANVIPACARLADLQMIQLVHSIIIK 3 T+ +VIPA A L+ + + +H +II+ Sbjct: 452 TMVSVIPALAELSVTRHAKWIHGLIIR 478 Score = 60.1 bits (144), Expect = 2e-07 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 +MY+KC +++ A +F+ + R LVSWN+++ G+SQNG +A+ L RM + PDS Sbjct: 190 NMYAKCRQIDDAYKMFDR-MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS 248 Query: 86 ITIANVIPACARLADLQMIQLVHSIIIK 3 IT+ V+PA A + L + + +H I+ Sbjct: 249 ITLVTVLPAAADVGLLMVGKSIHGYAIR 276 Score = 57.0 bits (136), Expect = 2e-06 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = -1 Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87 DMYSKCG + AR +F+ + R +++WN+++ GY +G A+ LF +M + V P+ Sbjct: 493 DMYSKCGAIHMARKLFDM-ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPND 551 Query: 86 ITIANVIPACA 54 IT +VI AC+ Sbjct: 552 ITYLSVISACS 562