BLASTX nr result

ID: Coptis24_contig00039490 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039490
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883803.1| pentatricopeptide repeat-containing protein ...    84   1e-14
ref|NP_178983.1| pentatricopeptide repeat-containing protein [Ar...    83   3e-14
ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,...    80   2e-13
ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi...    79   4e-13

>ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329643|gb|EFH60062.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 697

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 44/88 (50%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           DMYSKCG V  A+ +F+E +  R++VSWNSL+T Y QNG  +EA+ +FQ ML   V PD 
Sbjct: 195 DMYSKCGNVNDAQQVFDE-MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDE 253

Query: 86  ITIANVIPACARLADLQMIQLVHSIIIK 3
           +T+A+VI ACA L+ +++ Q VH+ ++K
Sbjct: 254 VTLASVISACASLSAIKVGQEVHARVVK 281



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = -1

Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
           Y+     + AR++F + +  R++VSWN+L+ GY+QNG + EA+ LF  + R+ V P   T
Sbjct: 330 YAMAASTKAARLMFTK-MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYT 388

Query: 80  IANVIPACARLADLQMIQLVHSIIIK 3
            AN++ ACA LADL +    H  ++K
Sbjct: 389 FANILKACADLADLHLGMQAHVHVLK 414



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRML-RDVNPDS 87
           DMY KCG VE   ++F + +  R  VSWN+++ G++QNG   EA+ LF+ ML     PD 
Sbjct: 435 DMYVKCGCVEEGYLVFRKMME-RDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDH 493

Query: 86  ITIANVIPAC 57
           IT+  V+ AC
Sbjct: 494 ITMIGVLSAC 503


>ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g13600 gi|4558664|gb|AAD22682.1| hypothetical protein
           [Arabidopsis thaliana] gi|330251150|gb|AEC06244.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 697

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/88 (48%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           DMYSKCG V  A+ +F+E +  R++VSWNSL+T + QNG  +EA+ +FQ ML   V PD 
Sbjct: 195 DMYSKCGNVNDAQRVFDE-MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253

Query: 86  ITIANVIPACARLADLQMIQLVHSIIIK 3
           +T+A+VI ACA L+ +++ Q VH  ++K
Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVK 281



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = -1

Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
           Y+     + AR++F + +  R++VSWN+L+ GY+QNG + EA+ LF  + R+ V P   +
Sbjct: 330 YAMAASTKAARLMFTK-MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388

Query: 80  IANVIPACARLADLQMIQLVHSIIIK 3
            AN++ ACA LA+L +    H  ++K
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLK 414



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           DMY KCG VE   ++F + +  R  VSWN+++ G++QNG   EA+ LF+ ML     PD 
Sbjct: 435 DMYVKCGCVEEGYLVFRKMME-RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493

Query: 86  ITIANVIPAC 57
           IT+  V+ AC
Sbjct: 494 ITMIGVLSAC 503


>ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
           gi|449523485|ref|XP_004168754.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLR-DVNPDS 87
           DMYSKCG VE A+ +F+E +  RS VSWNSL+T Y QNG   EA+ +F  M++  V PD 
Sbjct: 194 DMYSKCGRVEYAQSVFDE-MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252

Query: 86  ITIANVIPACARLADLQMIQLVHSIIIK 3
           +T+A+V+ ACA ++ ++  Q +H+ ++K
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVK 280



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = -1

Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
           Y+K  +V+ AR +F   +  + +++WN+L+ G +QNG + EA+ LF+ + R+ V P   T
Sbjct: 329 YAKASKVKVARYMFSNMMV-KDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYT 387

Query: 80  IANVIPACARLADLQMIQLVHSIIIK 3
             N++ ACA LADLQ+ +  HS ++K
Sbjct: 388 FGNLLNACANLADLQLGRQAHSHVLK 413



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRDVN-PDS 87
           DMY KCG VE    +F+  L  +  VSWN+++ GY+QNG   +A+ +F +ML     PD 
Sbjct: 434 DMYMKCGSVENGCRVFQHMLE-KDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDH 492

Query: 86  ITIANVIPACA 54
           +T+  V+ AC+
Sbjct: 493 VTMIGVLCACS 503


>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           D+YSKCG V+CA+ +F+  +  R++VSWNSL+T Y QNG   EA+ +F RM+     PD 
Sbjct: 194 DIYSKCGFVDCAQRVFDGMME-RNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDE 252

Query: 86  ITIANVIPACARLADLQMIQLVHSIIIK 3
           +T+A+V+ ACA LA  +    +H+ ++K
Sbjct: 253 VTLASVVSACASLAAAKQGLEIHACVVK 280



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = -1

Query: 257 YSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDSIT 81
           Y+K   V+ AR++F + +  R++VSWN+L+ GY+QNG + EA+ LF+ + R+ + P   T
Sbjct: 329 YAKTASVKAARLLFTKMIE-RNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYT 387

Query: 80  IANVIPACARLADLQMIQLVHSIIIK 3
             N++ ACA LADLQ+ +  H+ ++K
Sbjct: 388 FGNLLNACANLADLQLGRQAHAHVLK 413



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           DMY KCG VE    IFE  +  R  VSWN+++ GY+QNG  +EA+ LF++ML     PD 
Sbjct: 434 DMYMKCGSVEEGCRIFENMVE-RDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDH 492

Query: 86  ITIANVIPACARLADLQ 36
           +T+   + AC+    +Q
Sbjct: 493 VTMIGALCACSHAGLVQ 509


>ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           DMYSKCG VE AR+IF+  +  +++VSWNS++ GY QNG   +A+ +F++ML + ++P  
Sbjct: 291 DMYSKCGSVETARLIFDG-MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTG 349

Query: 86  ITIANVIPACARLADLQMIQLVHSII 9
           +TI   + ACA L DL+  + VH  +
Sbjct: 350 VTIMEALHACADLGDLERGKFVHKFV 375



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = -1

Query: 260 MYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLR-DVNPDSI 84
           MYSKC  V+ A  IF   L+GR+ VSWN+++ GY+QNG   EA+  F  M    + PDS 
Sbjct: 393 MYSKCKRVDIASDIFNN-LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 83  TIANVIPACARLADLQMIQLVHSIIIK 3
           T+ +VIPA A L+  +  + +H +II+
Sbjct: 452 TMVSVIPALAELSVTRHAKWIHGLIIR 478



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           +MY+KC +++ A  +F+  +  R LVSWN+++ G+SQNG   +A+ L  RM  +   PDS
Sbjct: 190 NMYAKCRQIDDAYKMFDR-MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS 248

Query: 86  ITIANVIPACARLADLQMIQLVHSIIIK 3
           IT+  V+PA A +  L + + +H   I+
Sbjct: 249 ITLVTVLPAAADVGLLMVGKSIHGYAIR 276



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = -1

Query: 263 DMYSKCGEVECARIIFEEELHGRSLVSWNSLLTGYSQNGCDLEAVFLFQRMLRD-VNPDS 87
           DMYSKCG +  AR +F+  +  R +++WN+++ GY  +G    A+ LF +M +  V P+ 
Sbjct: 493 DMYSKCGAIHMARKLFDM-ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPND 551

Query: 86  ITIANVIPACA 54
           IT  +VI AC+
Sbjct: 552 ITYLSVISACS 562


Top