BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039486
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309782.1| GRAS family transcription factor [Populus tr...   135   5e-30
ref|XP_002327997.1| GRAS family transcription factor [Populus tr...   134   8e-30
emb|CAN61051.1| hypothetical protein VITISV_023622 [Vitis vinifera]   130   9e-29
ref|XP_002272196.1| PREDICTED: protein SHORT-ROOT [Vitis vinifer...   130   1e-28
ref|XP_003546837.1| PREDICTED: protein SHORT-ROOT-like [Glycine ...   124   6e-27

>ref|XP_002309782.1| GRAS family transcription factor [Populus trichocarpa]
           gi|222852685|gb|EEE90232.1| GRAS family transcription
           factor [Populus trichocarpa]
          Length = 411

 Score =  135 bits (339), Expect = 5e-30
 Identities = 69/114 (60%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
 Frame = -3

Query: 400 FYTYYFEMLEESFVPTSNERLMLERECSRSIISVLACXXXXXXXXXXXXXXGTQWSEKLK 221
           +YT YFEMLEESFVPTSNERLMLERECSR+I+ VLAC              G+QW E+L+
Sbjct: 295 YYTLYFEMLEESFVPTSNERLMLERECSRNIVRVLACDEGNDGGECERRERGSQWFERLR 354

Query: 220 VSFTPFLYSXXXXXXVKALLKRYRSGWSLQPAQGE-DAGLYLAWKEEPVVWASA 62
            +F+P  +S      VKALLKRYR+GW+L   QG+ D+G+YL WKEEPVVWASA
Sbjct: 355 EAFSPVGFSDDVVDDVKALLKRYRAGWALVLPQGDHDSGIYLTWKEEPVVWASA 408


>ref|XP_002327997.1| GRAS family transcription factor [Populus trichocarpa]
           gi|222837406|gb|EEE75785.1| GRAS family transcription
           factor [Populus trichocarpa]
          Length = 411

 Score =  134 bits (337), Expect = 8e-30
 Identities = 68/114 (59%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
 Frame = -3

Query: 400 FYTYYFEMLEESFVPTSNERLMLERECSRSIISVLACXXXXXXXXXXXXXXGTQWSEKLK 221
           +YT YFEMLEESFVPTSNERLMLERECSR+I+ VLAC              G QWSE+L+
Sbjct: 295 YYTLYFEMLEESFVPTSNERLMLERECSRNIVRVLACDEETGGGECERRERGVQWSERLR 354

Query: 220 VSFTPFLYSXXXXXXVKALLKRYRSGWSLQPAQGE-DAGLYLAWKEEPVVWASA 62
            +F+P  +S      VKALLKRY++GW+L   QG+ ++G+YL WKEEPVVWASA
Sbjct: 355 EAFSPVGFSDDVVDDVKALLKRYKAGWALVLPQGDHESGIYLTWKEEPVVWASA 408


>emb|CAN61051.1| hypothetical protein VITISV_023622 [Vitis vinifera]
          Length = 436

 Score =  130 bits (328), Expect = 9e-29
 Identities = 74/118 (62%), Positives = 81/118 (68%), Gaps = 5/118 (4%)
 Frame = -3

Query: 400 FYTYYFEMLEESFVPTSNERLMLERECSRSIISVLAC--XXXXXXXXXXXXXXGTQWSEK 227
           FYT YFEMLEESFVPTSNERLMLERECSRSI+ VLAC                G QWSE 
Sbjct: 316 FYTLYFEMLEESFVPTSNERLMLERECSRSIVRVLACDDIEDDTGEDCERREKGIQWSEG 375

Query: 226 LKVSFTPFLYSXXXXXXVKALLKRYRSGWSL-QPAQGED--AGLYLAWKEEPVVWASA 62
           LK  F+P  +S      VKALLKRYRSGW+L  P QGE+   G+YL WK+EPVVWASA
Sbjct: 376 LKEXFSPLGFSEDVVDDVKALLKRYRSGWALVPPQQGENHQLGIYLTWKDEPVVWASA 433


>ref|XP_002272196.1| PREDICTED: protein SHORT-ROOT [Vitis vinifera]
           gi|296081342|emb|CBI17688.3| unnamed protein product
           [Vitis vinifera]
          Length = 436

 Score =  130 bits (327), Expect = 1e-28
 Identities = 74/118 (62%), Positives = 81/118 (68%), Gaps = 5/118 (4%)
 Frame = -3

Query: 400 FYTYYFEMLEESFVPTSNERLMLERECSRSIISVLAC--XXXXXXXXXXXXXXGTQWSEK 227
           FYT YFEMLEESFVPTSNERLMLERECSRSI+ VLAC                G QWSE 
Sbjct: 316 FYTLYFEMLEESFVPTSNERLMLERECSRSIVRVLACDDIEDDTGEDCERREKGIQWSEG 375

Query: 226 LKVSFTPFLYSXXXXXXVKALLKRYRSGWSL-QPAQGED--AGLYLAWKEEPVVWASA 62
           LK  F+P  +S      VKALLKRYRSGW+L  P QGE+   G+YL WK+EPVVWASA
Sbjct: 376 LKEVFSPLGFSEDVVDDVKALLKRYRSGWALVPPQQGENHQLGIYLTWKDEPVVWASA 433


>ref|XP_003546837.1| PREDICTED: protein SHORT-ROOT-like [Glycine max]
          Length = 437

 Score =  124 bits (312), Expect = 6e-27
 Identities = 68/121 (56%), Positives = 81/121 (66%), Gaps = 8/121 (6%)
 Frame = -3

Query: 400 FYTYYFEMLEESFVPTSNERLMLERECSRSIISVLAC------XXXXXXXXXXXXXXGTQ 239
           FYT YFEMLEESF PTSNERLMLERECSR+I+ VLAC                    G Q
Sbjct: 314 FYTLYFEMLEESFPPTSNERLMLERECSRTIVRVLACCGSGEFEDDGEFDCCERRERGIQ 373

Query: 238 WSEKLKVSFTPFLYSXXXXXXVKALLKRYRSGWSLQPAQGED--AGLYLAWKEEPVVWAS 65
           W E+L+ +F+P  +S      VKALLKRY+ GWSL  +QG++  +G+YL WKEEPVVWAS
Sbjct: 374 WCERLRSAFSPSGFSDDVVDDVKALLKRYQPGWSLVVSQGDEHLSGIYLTWKEEPVVWAS 433

Query: 64  A 62
           A
Sbjct: 434 A 434