BLASTX nr result
ID: Coptis24_contig00039482
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039482 (273 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI27276.3| unnamed protein product [Vitis vinifera] 56 3e-06 ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 56 3e-06 ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi... 49 9e-06 >emb|CBI27276.3| unnamed protein product [Vitis vinifera] Length = 248 Score = 55.8 bits (133), Expect = 3e-06 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 4/58 (6%) Frame = -2 Query: 224 VEMFQIMWLAGFEPDKTVFVSVISACAHLGAILINI----YLDRMQLLLSIRLNTALI 63 ++MF++M G EPD+ + VS++ ACAHLGA+ I + YLD++ LS+RL+T LI Sbjct: 116 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLI 173 >ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera] Length = 536 Score = 55.8 bits (133), Expect = 3e-06 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 4/58 (6%) Frame = -2 Query: 224 VEMFQIMWLAGFEPDKTVFVSVISACAHLGAILINI----YLDRMQLLLSIRLNTALI 63 ++MF++M G EPD+ + VS++ ACAHLGA+ I + YLD++ LS+RL+T LI Sbjct: 222 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLI 279 >ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] Length = 953 Score = 48.5 bits (114), Expect(3) = 9e-06 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 4/61 (6%) Frame = -2 Query: 218 MFQIMWLAGFEPDKTVFVSVISACAHLGAI----LINIYLDRMQLLLSIRLNTALILICM 51 +FQ M ++GF+PD+T VSVISACA L A+ ++ Y+ R L +++ L T LI + M Sbjct: 495 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 554 Query: 50 Q 48 + Sbjct: 555 K 555 Score = 23.9 bits (50), Expect(3) = 9e-06 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 72 STYIDMYARCGNLVLATKLFDDM 4 +T IDMY +CG + A ++F M Sbjct: 547 TTLIDMYMKCGCVETALEVFYGM 569 Score = 20.8 bits (42), Expect(3) = 9e-06 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -1 Query: 273 WGSVIYGYL*NNCFKE 226 W S+I GY N+ F E Sbjct: 476 WSSMISGYAQNDLFDE 491