BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039482
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27276.3| unnamed protein product [Vitis vinifera]               56   3e-06
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...    49   9e-06

>emb|CBI27276.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
 Frame = -2

Query: 224 VEMFQIMWLAGFEPDKTVFVSVISACAHLGAILINI----YLDRMQLLLSIRLNTALI 63
           ++MF++M   G EPD+ + VS++ ACAHLGA+ I +    YLD++   LS+RL+T LI
Sbjct: 116 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLI 173


>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
 Frame = -2

Query: 224 VEMFQIMWLAGFEPDKTVFVSVISACAHLGAILINI----YLDRMQLLLSIRLNTALI 63
           ++MF++M   G EPD+ + VS++ ACAHLGA+ I +    YLD++   LS+RL+T LI
Sbjct: 222 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLI 279


>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score = 48.5 bits (114), Expect(3) = 9e-06
 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
 Frame = -2

Query: 218 MFQIMWLAGFEPDKTVFVSVISACAHLGAI----LINIYLDRMQLLLSIRLNTALILICM 51
           +FQ M ++GF+PD+T  VSVISACA L A+     ++ Y+ R  L +++ L T LI + M
Sbjct: 495 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 554

Query: 50  Q 48
           +
Sbjct: 555 K 555



 Score = 23.9 bits (50), Expect(3) = 9e-06
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 72  STYIDMYARCGNLVLATKLFDDM 4
           +T IDMY +CG +  A ++F  M
Sbjct: 547 TTLIDMYMKCGCVETALEVFYGM 569



 Score = 20.8 bits (42), Expect(3) = 9e-06
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 273 WGSVIYGYL*NNCFKE 226
           W S+I GY  N+ F E
Sbjct: 476 WSSMISGYAQNDLFDE 491