BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039363
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310719.1| predicted protein [Populus trichocarpa] gi|2...   104   9e-21
ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic su...   103   2e-20
emb|CBI21412.3| unnamed protein product [Vitis vinifera]              103   2e-20
ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, puta...    99   4e-19
ref|XP_004169620.1| PREDICTED: DNA polymerase alpha catalytic su...    98   6e-19

>ref|XP_002310719.1| predicted protein [Populus trichocarpa] gi|222853622|gb|EEE91169.1|
           predicted protein [Populus trichocarpa]
          Length = 1312

 Score =  104 bits (259), Expect = 9e-21
 Identities = 54/93 (58%), Positives = 64/93 (68%), Gaps = 9/93 (9%)
 Frame = -2

Query: 253 LNAKLKGEV-DPALSASAGWKALQNGDNGDVGV--------IRKECNAEVKSEIFLDSDG 101
           LNAK+  E  DPALSA+AGWK + NG NG   V        ++   N E +SE  LD DG
Sbjct: 64  LNAKISDEERDPALSATAGWKEVMNGKNGGEAVGGAGVVEEVKSGANCEEQSEFELDGDG 123

Query: 100 SLPFYIIDAYEEFYGNNLGTVYLFGKVKAGNTY 2
           SLPFYI+DA+EE +G N GT+YLFGKVKAGNTY
Sbjct: 124 SLPFYILDAHEEIFGANRGTIYLFGKVKAGNTY 156


>ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis
           vinifera]
          Length = 1522

 Score =  103 bits (256), Expect = 2e-20
 Identities = 52/89 (58%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253 LNAKLKGEVDPALSAS-AGWKALQNGDNGDVG----VIRKECNAEVKSEIFLDSDGSLPF 89
           LNAK+K E D  LSA+ AGW+A++NG N   G    V+    N E K++  LDSDGSLPF
Sbjct: 283 LNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFLLDSDGSLPF 342

Query: 88  YIIDAYEEFYGNNLGTVYLFGKVKAGNTY 2
           YI+DA+EEFYG N+G +YLFGKVKAG+ Y
Sbjct: 343 YILDAHEEFYGANMGNLYLFGKVKAGSAY 371


>emb|CBI21412.3| unnamed protein product [Vitis vinifera]
          Length = 1561

 Score =  103 bits (256), Expect = 2e-20
 Identities = 52/89 (58%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253 LNAKLKGEVDPALSAS-AGWKALQNGDNGDVG----VIRKECNAEVKSEIFLDSDGSLPF 89
           LNAK+K E D  LSA+ AGW+A++NG N   G    V+    N E K++  LDSDGSLPF
Sbjct: 284 LNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFLLDSDGSLPF 343

Query: 88  YIIDAYEEFYGNNLGTVYLFGKVKAGNTY 2
           YI+DA+EEFYG N+G +YLFGKVKAG+ Y
Sbjct: 344 YILDAHEEFYGANMGNLYLFGKVKAGSAY 372


>ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
           gi|223537171|gb|EEF38804.1| DNA polymerase alpha
           catalytic subunit, putative [Ricinus communis]
          Length = 1526

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 51/89 (57%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253 LNAKLK-GEVDPALSASAGWKALQNGDNGDVGVIRKECNAEV----KSEIFLDSDGSLPF 89
           LNAK+   E DPA SA A W+A+++G NG V  + +E  + V    +SE  L++DGSLPF
Sbjct: 282 LNAKISIEEKDPAFSAMADWQAVRSGGNGSVAGVTEEVKSGVVCDEQSEFELEADGSLPF 341

Query: 88  YIIDAYEEFYGNNLGTVYLFGKVKAGNTY 2
           YIIDA+EE +G N+GT+YLFGKVKAGNTY
Sbjct: 342 YIIDAHEEIFGANMGTLYLFGKVKAGNTY 370


>ref|XP_004169620.1| PREDICTED: DNA polymerase alpha catalytic subunit-like, partial
           [Cucumis sativus]
          Length = 498

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -2

Query: 253 LNAKLKGEVDPALSASAGWKALQNGDNGDVGVIRKECNAEVKSEIFLDSDGSLPFYIIDA 74
           LNAK+  E DPALSA+A W+A+++  +G V    +   AE KSE   D+DGSLPFYI+DA
Sbjct: 314 LNAKISNERDPALSATAEWQAVRSEGSGSVNSAAEM--AEEKSEFDTDTDGSLPFYIVDA 371

Query: 73  YEEFYGNNLGTVYLFGKVKAGNTY 2
           +EE +G N+GTVYLFGKVKAG+T+
Sbjct: 372 HEELFGANMGTVYLFGKVKAGDTF 395