BLASTX nr result

ID: Coptis24_contig00039324 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039324
         (250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,...    96   4e-18
ref|XP_002886049.1| pentatricopeptide repeat-containing protein ...    89   4e-16
ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|...    80   1e-13

>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/82 (57%), Positives = 65/82 (79%)
 Frame = -1

Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
           G + +V TYT+LIDS CK G+++ A+YLF+ +  EGL PDVV+YN+LM+GY KKG+L KA
Sbjct: 388 GIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKA 447

Query: 67  FELVDTMRLADVSPNVASYNII 2
           FEL+  MR A VSP++ +YNI+
Sbjct: 448 FELLSMMRSAGVSPDLVTYNIL 469



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/80 (37%), Positives = 48/80 (60%)
 Frame = -1

Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
           G K  VV YT++IDS CK   LK A  +   + + G+  D V+ +S++DGY K G   K+
Sbjct: 251 GIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG---KS 307

Query: 67  FELVDTMRLADVSPNVASYN 8
            E +D + + ++SPN+  +N
Sbjct: 308 EEAMDVLEVFNLSPNIFVFN 327


>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 687

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/82 (53%), Positives = 61/82 (74%)
 Frame = -1

Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
           G   +V TYT+LI++ CK+GD+  A+YL + +  EGL PDVVT+N L+DG+ KKGYL KA
Sbjct: 421 GITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKA 480

Query: 67  FELVDTMRLADVSPNVASYNII 2
           FEL+D MR A +SP+  +YN +
Sbjct: 481 FELLDIMRSAGMSPDTVTYNAL 502


>ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331889|gb|EFH62308.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 755

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 41/78 (52%), Positives = 59/78 (75%)
 Frame = -1

Query: 235 AVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELV 56
           +++TYT+LI +  K G +  A+ +FR+++ EGL PDVVTYN+LM GY K   L+K FEL+
Sbjct: 509 SLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELI 568

Query: 55  DTMRLADVSPNVASYNII 2
           D MR A +SP+VA+YNI+
Sbjct: 569 DEMRSAGISPDVATYNIL 586



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 28/77 (36%), Positives = 45/77 (58%)
 Frame = -1

Query: 232 VVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELVD 53
           VVT + L+  YC+   ++ A  LF  +   GL+PDVV YN+L+ GY   G + KA EL+ 
Sbjct: 650 VVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 709

Query: 52  TMRLADVSPNVASYNII 2
            M    + PN ++++ +
Sbjct: 710 LMVQRGMLPNESTHHAL 726


>ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
           gi|449503522|ref|XP_004162044.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
          Length = 532

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 8/90 (8%)
 Frame = -1

Query: 247 GFKLAVVTYTVLIDSYCKTG--------DLKSADYLFRMIEREGLRPDVVTYNSLMDGYS 92
           G K  VV YT +I+S CK          D++ A+ +F  +  EGL+PDVV YN LMD Y 
Sbjct: 266 GSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYG 325

Query: 91  KKGYLHKAFELVDTMRLADVSPNVASYNII 2
           KKGY+HKAF+L+D MR  +V+P+V +YN +
Sbjct: 326 KKGYMHKAFKLLDMMRSTNVTPDVVTYNTL 355



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = -1

Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
           G K  VV Y +L+D+Y K G +  A  L  M+    + PDVVTYN+L++G   +G+L +A
Sbjct: 309 GLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEA 368

Query: 67  FELVDTMRLADVSPNVASY-NII 2
            +++D +     S +V +Y NII
Sbjct: 369 KDILDELIRRGFSVDVVTYTNII 391


>gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1|
           putative salt-inducible protein [Arabidopsis thaliana]
           gi|110738808|dbj|BAF01327.1| putative salt-inducible
           protein [Arabidopsis thaliana]
          Length = 693

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 38/78 (48%), Positives = 56/78 (71%)
 Frame = -1

Query: 235 AVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELV 56
           ++ T T+LI +  + G +  A+ +FR ++ EGL+ DVVTYN+LM GY K   L+K FEL+
Sbjct: 442 SLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELI 501

Query: 55  DTMRLADVSPNVASYNII 2
           D MR A +SP+VA+YNI+
Sbjct: 502 DEMRSAGISPDVATYNIL 519



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = -1

Query: 232 VVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELVD 53
           VVT + L+  YCK   ++ A  LF  +   GL+PDVV YN+L+ GY   G + KA EL+ 
Sbjct: 583 VVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 642

Query: 52  TMRLADVSPNVASYNII 2
            M    + PN ++++ +
Sbjct: 643 LMVQRGMLPNESTHHAL 659


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