BLASTX nr result
ID: Coptis24_contig00039324
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039324
(250 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi... 101 7e-20
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,... 96 4e-18
ref|XP_002886049.1| pentatricopeptide repeat-containing protein ... 89 4e-16
ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi... 86 2e-15
gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|... 80 1e-13
>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 101 bits (251), Expect = 7e-20
Identities = 47/82 (57%), Positives = 65/82 (79%)
Frame = -1
Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
G + +V TYT+LIDS CK G+++ A+YLF+ + EGL PDVV+YN+LM+GY KKG+L KA
Sbjct: 388 GIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKA 447
Query: 67 FELVDTMRLADVSPNVASYNII 2
FEL+ MR A VSP++ +YNI+
Sbjct: 448 FELLSMMRSAGVSPDLVTYNIL 469
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = -1
Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
G K VV YT++IDS CK LK A + + + G+ D V+ +S++DGY K G K+
Sbjct: 251 GIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG---KS 307
Query: 67 FELVDTMRLADVSPNVASYN 8
E +D + + ++SPN+ +N
Sbjct: 308 EEAMDVLEVFNLSPNIFVFN 327
>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 687
Score = 95.5 bits (236), Expect = 4e-18
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = -1
Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
G +V TYT+LI++ CK+GD+ A+YL + + EGL PDVVT+N L+DG+ KKGYL KA
Sbjct: 421 GITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKA 480
Query: 67 FELVDTMRLADVSPNVASYNII 2
FEL+D MR A +SP+ +YN +
Sbjct: 481 FELLDIMRSAGMSPDTVTYNAL 502
>ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331889|gb|EFH62308.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 755
Score = 89.0 bits (219), Expect = 4e-16
Identities = 41/78 (52%), Positives = 59/78 (75%)
Frame = -1
Query: 235 AVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELV 56
+++TYT+LI + K G + A+ +FR+++ EGL PDVVTYN+LM GY K L+K FEL+
Sbjct: 509 SLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELI 568
Query: 55 DTMRLADVSPNVASYNII 2
D MR A +SP+VA+YNI+
Sbjct: 569 DEMRSAGISPDVATYNIL 586
Score = 55.8 bits (133), Expect = 3e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = -1
Query: 232 VVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELVD 53
VVT + L+ YC+ ++ A LF + GL+PDVV YN+L+ GY G + KA EL+
Sbjct: 650 VVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 709
Query: 52 TMRLADVSPNVASYNII 2
M + PN ++++ +
Sbjct: 710 LMVQRGMLPNESTHHAL 726
>ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 8/90 (8%)
Frame = -1
Query: 247 GFKLAVVTYTVLIDSYCKTG--------DLKSADYLFRMIEREGLRPDVVTYNSLMDGYS 92
G K VV YT +I+S CK D++ A+ +F + EGL+PDVV YN LMD Y
Sbjct: 266 GSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYG 325
Query: 91 KKGYLHKAFELVDTMRLADVSPNVASYNII 2
KKGY+HKAF+L+D MR +V+P+V +YN +
Sbjct: 326 KKGYMHKAFKLLDMMRSTNVTPDVVTYNTL 355
Score = 58.2 bits (139), Expect = 7e-07
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = -1
Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68
G K VV Y +L+D+Y K G + A L M+ + PDVVTYN+L++G +G+L +A
Sbjct: 309 GLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEA 368
Query: 67 FELVDTMRLADVSPNVASY-NII 2
+++D + S +V +Y NII
Sbjct: 369 KDILDELIRRGFSVDVVTYTNII 391
>gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1|
putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible
protein [Arabidopsis thaliana]
Length = 693
Score = 80.5 bits (197), Expect = 1e-13
Identities = 38/78 (48%), Positives = 56/78 (71%)
Frame = -1
Query: 235 AVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELV 56
++ T T+LI + + G + A+ +FR ++ EGL+ DVVTYN+LM GY K L+K FEL+
Sbjct: 442 SLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELI 501
Query: 55 DTMRLADVSPNVASYNII 2
D MR A +SP+VA+YNI+
Sbjct: 502 DEMRSAGISPDVATYNIL 519
Score = 57.8 bits (138), Expect = 9e-07
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = -1
Query: 232 VVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELVD 53
VVT + L+ YCK ++ A LF + GL+PDVV YN+L+ GY G + KA EL+
Sbjct: 583 VVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 642
Query: 52 TMRLADVSPNVASYNII 2
M + PN ++++ +
Sbjct: 643 LMVQRGMLPNESTHHAL 659