BLASTX nr result
ID: Coptis24_contig00039324
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039324 (250 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi... 101 7e-20 ref|XP_002525572.1| pentatricopeptide repeat-containing protein,... 96 4e-18 ref|XP_002886049.1| pentatricopeptide repeat-containing protein ... 89 4e-16 ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi... 86 2e-15 gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|... 80 1e-13 >ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280 [Vitis vinifera] Length = 644 Score = 101 bits (251), Expect = 7e-20 Identities = 47/82 (57%), Positives = 65/82 (79%) Frame = -1 Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68 G + +V TYT+LIDS CK G+++ A+YLF+ + EGL PDVV+YN+LM+GY KKG+L KA Sbjct: 388 GIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKA 447 Query: 67 FELVDTMRLADVSPNVASYNII 2 FEL+ MR A VSP++ +YNI+ Sbjct: 448 FELLSMMRSAGVSPDLVTYNIL 469 Score = 54.7 bits (130), Expect = 8e-06 Identities = 30/80 (37%), Positives = 48/80 (60%) Frame = -1 Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68 G K VV YT++IDS CK LK A + + + G+ D V+ +S++DGY K G K+ Sbjct: 251 GIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG---KS 307 Query: 67 FELVDTMRLADVSPNVASYN 8 E +D + + ++SPN+ +N Sbjct: 308 EEAMDVLEVFNLSPNIFVFN 327 >ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 687 Score = 95.5 bits (236), Expect = 4e-18 Identities = 44/82 (53%), Positives = 61/82 (74%) Frame = -1 Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68 G +V TYT+LI++ CK+GD+ A+YL + + EGL PDVVT+N L+DG+ KKGYL KA Sbjct: 421 GITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKA 480 Query: 67 FELVDTMRLADVSPNVASYNII 2 FEL+D MR A +SP+ +YN + Sbjct: 481 FELLDIMRSAGMSPDTVTYNAL 502 >ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 755 Score = 89.0 bits (219), Expect = 4e-16 Identities = 41/78 (52%), Positives = 59/78 (75%) Frame = -1 Query: 235 AVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELV 56 +++TYT+LI + K G + A+ +FR+++ EGL PDVVTYN+LM GY K L+K FEL+ Sbjct: 509 SLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELI 568 Query: 55 DTMRLADVSPNVASYNII 2 D MR A +SP+VA+YNI+ Sbjct: 569 DEMRSAGISPDVATYNIL 586 Score = 55.8 bits (133), Expect = 3e-06 Identities = 28/77 (36%), Positives = 45/77 (58%) Frame = -1 Query: 232 VVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELVD 53 VVT + L+ YC+ ++ A LF + GL+PDVV YN+L+ GY G + KA EL+ Sbjct: 650 VVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 709 Query: 52 TMRLADVSPNVASYNII 2 M + PN ++++ + Sbjct: 710 LMVQRGMLPNESTHHAL 726 >ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280-like [Cucumis sativus] gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280-like [Cucumis sativus] Length = 532 Score = 86.3 bits (212), Expect = 2e-15 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 8/90 (8%) Frame = -1 Query: 247 GFKLAVVTYTVLIDSYCKTG--------DLKSADYLFRMIEREGLRPDVVTYNSLMDGYS 92 G K VV YT +I+S CK D++ A+ +F + EGL+PDVV YN LMD Y Sbjct: 266 GSKPDVVDYTTVINSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYG 325 Query: 91 KKGYLHKAFELVDTMRLADVSPNVASYNII 2 KKGY+HKAF+L+D MR +V+P+V +YN + Sbjct: 326 KKGYMHKAFKLLDMMRSTNVTPDVVTYNTL 355 Score = 58.2 bits (139), Expect = 7e-07 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Frame = -1 Query: 247 GFKLAVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKA 68 G K VV Y +L+D+Y K G + A L M+ + PDVVTYN+L++G +G+L +A Sbjct: 309 GLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEA 368 Query: 67 FELVDTMRLADVSPNVASY-NII 2 +++D + S +V +Y NII Sbjct: 369 KDILDELIRRGFSVDVVTYTNII 391 >gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana] gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana] Length = 693 Score = 80.5 bits (197), Expect = 1e-13 Identities = 38/78 (48%), Positives = 56/78 (71%) Frame = -1 Query: 235 AVVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELV 56 ++ T T+LI + + G + A+ +FR ++ EGL+ DVVTYN+LM GY K L+K FEL+ Sbjct: 442 SLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELI 501 Query: 55 DTMRLADVSPNVASYNII 2 D MR A +SP+VA+YNI+ Sbjct: 502 DEMRSAGISPDVATYNIL 519 Score = 57.8 bits (138), Expect = 9e-07 Identities = 29/77 (37%), Positives = 45/77 (58%) Frame = -1 Query: 232 VVTYTVLIDSYCKTGDLKSADYLFRMIEREGLRPDVVTYNSLMDGYSKKGYLHKAFELVD 53 VVT + L+ YCK ++ A LF + GL+PDVV YN+L+ GY G + KA EL+ Sbjct: 583 VVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 642 Query: 52 TMRLADVSPNVASYNII 2 M + PN ++++ + Sbjct: 643 LMVQRGMLPNESTHHAL 659