BLASTX nr result
ID: Coptis24_contig00039230
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039230 (416 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCA94636.1| maturase K, partial [Clematis vitalba] 84 5e-29 dbj|BAM15751.1| maturase K (chloroplast) [Coptis teeta] 98 8e-19 dbj|BAM15750.1| maturase K (chloroplast) [Coptis chinensis] 98 8e-19 dbj|BAM15730.1| maturase K (chloroplast) [Coptis japonica var. a... 95 7e-18 emb|CCA94633.1| maturase K, partial [Erica carnea] 57 3e-15 >emb|CCA94636.1| maturase K, partial [Clematis vitalba] Length = 188 Score = 83.6 bits (205), Expect(2) = 5e-29 Identities = 46/74 (62%), Positives = 50/74 (67%) Frame = +3 Query: 3 STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182 STVRSFL RLGS QVL I R S+ LYKE+IWYFDIIRINDLTN S Sbjct: 57 STVRSFLKRLGSEFLEEFLMEEEQVLSFILPRISYFSKRLYKERIWYFDIIRINDLTNLS 116 Query: 183 *LVMRPCKRN*FLN 224 LV++PCKRN FLN Sbjct: 117 WLVIKPCKRNLFLN 130 Score = 69.3 bits (168), Expect(2) = 5e-29 Identities = 34/52 (65%), Positives = 42/52 (80%) Frame = +2 Query: 236 KTFQY*NAYSVVIESTEYSAKVKIKYHLGNFVLDLYIEKAVCS*KCRHGLGR 391 K F++ NAY+VVIESTEYS ++Y LGN + +LYIEKAVC+ KCRHGLGR Sbjct: 139 KFFRFCNAYAVVIESTEYSTF--LEYRLGNCIFNLYIEKAVCNEKCRHGLGR 188 >dbj|BAM15751.1| maturase K (chloroplast) [Coptis teeta] Length = 508 Score = 97.8 bits (242), Expect = 8e-19 Identities = 49/60 (81%), Positives = 49/60 (81%) Frame = +3 Query: 3 STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182 STVRSFLNRLGS QVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS Sbjct: 449 STVRSFLNRLGSEFLEEFLMEEEQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 508 >dbj|BAM15750.1| maturase K (chloroplast) [Coptis chinensis] Length = 508 Score = 97.8 bits (242), Expect = 8e-19 Identities = 49/60 (81%), Positives = 49/60 (81%) Frame = +3 Query: 3 STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182 STVRSFLNRLGS QVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS Sbjct: 449 STVRSFLNRLGSEFLEEFLMEEEQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 508 >dbj|BAM15730.1| maturase K (chloroplast) [Coptis japonica var. anemonifolia] gi|388240470|dbj|BAM15731.1| maturase K (chloroplast) [Coptis japonica var. anemonifolia] gi|388240484|dbj|BAM15738.1| maturase K (chloroplast) [Coptis japonica var. major] gi|388240486|dbj|BAM15739.1| maturase K (chloroplast) [Coptis japonica var. major] gi|388240488|dbj|BAM15740.1| maturase K (chloroplast) [Coptis japonica var. major] Length = 508 Score = 94.7 bits (234), Expect = 7e-18 Identities = 48/60 (80%), Positives = 48/60 (80%) Frame = +3 Query: 3 STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182 STVRSFLNRLGS QVLGRIKERTCSSSQ LYKEQIWYFDIIRINDLTNHS Sbjct: 449 STVRSFLNRLGSEFLEEFLMEEEQVLGRIKERTCSSSQRLYKEQIWYFDIIRINDLTNHS 508 >emb|CCA94633.1| maturase K, partial [Erica carnea] Length = 196 Score = 57.0 bits (136), Expect(2) = 3e-15 Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Frame = +3 Query: 3 STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182 STVR+F RLG QV + S+S LY +IWY DII INDL N+ Sbjct: 57 STVRAFSKRLGVGLLEEFFTEEEQVFYLTFPKASSTSGELYGRRIWYLDIICINDLANYE 116 Query: 183 *LVMRPCKRN*FL---NDEE 233 +MRPCK+ + NDEE Sbjct: 117 WFIMRPCKQKLCINNRNDEE 136 Score = 49.3 bits (116), Expect(2) = 3e-15 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = +1 Query: 319 RELRFRFIHRESRVQLKMQARFGEGF 396 +EL FR+IH+ESRVQLKMQARFGEGF Sbjct: 171 KELSFRWIHKESRVQLKMQARFGEGF 196