BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039230
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA94636.1| maturase K, partial [Clematis vitalba]                 84   5e-29
dbj|BAM15751.1| maturase K (chloroplast) [Coptis teeta]                98   8e-19
dbj|BAM15750.1| maturase K (chloroplast) [Coptis chinensis]            98   8e-19
dbj|BAM15730.1| maturase K (chloroplast) [Coptis japonica var. a...    95   7e-18
emb|CCA94633.1| maturase K, partial [Erica carnea]                     57   3e-15

>emb|CCA94636.1| maturase K, partial [Clematis vitalba]
          Length = 188

 Score = 83.6 bits (205), Expect(2) = 5e-29
 Identities = 46/74 (62%), Positives = 50/74 (67%)
 Frame = +3

Query: 3   STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182
           STVRSFL RLGS           QVL  I  R    S+ LYKE+IWYFDIIRINDLTN S
Sbjct: 57  STVRSFLKRLGSEFLEEFLMEEEQVLSFILPRISYFSKRLYKERIWYFDIIRINDLTNLS 116

Query: 183 *LVMRPCKRN*FLN 224
            LV++PCKRN FLN
Sbjct: 117 WLVIKPCKRNLFLN 130



 Score = 69.3 bits (168), Expect(2) = 5e-29
 Identities = 34/52 (65%), Positives = 42/52 (80%)
 Frame = +2

Query: 236 KTFQY*NAYSVVIESTEYSAKVKIKYHLGNFVLDLYIEKAVCS*KCRHGLGR 391
           K F++ NAY+VVIESTEYS    ++Y LGN + +LYIEKAVC+ KCRHGLGR
Sbjct: 139 KFFRFCNAYAVVIESTEYSTF--LEYRLGNCIFNLYIEKAVCNEKCRHGLGR 188


>dbj|BAM15751.1| maturase K (chloroplast) [Coptis teeta]
          Length = 508

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 49/60 (81%), Positives = 49/60 (81%)
 Frame = +3

Query: 3   STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182
           STVRSFLNRLGS           QVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS
Sbjct: 449 STVRSFLNRLGSEFLEEFLMEEEQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 508


>dbj|BAM15750.1| maturase K (chloroplast) [Coptis chinensis]
          Length = 508

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 49/60 (81%), Positives = 49/60 (81%)
 Frame = +3

Query: 3   STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182
           STVRSFLNRLGS           QVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS
Sbjct: 449 STVRSFLNRLGSEFLEEFLMEEEQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 508


>dbj|BAM15730.1| maturase K (chloroplast) [Coptis japonica var. anemonifolia]
           gi|388240470|dbj|BAM15731.1| maturase K (chloroplast)
           [Coptis japonica var. anemonifolia]
           gi|388240484|dbj|BAM15738.1| maturase K (chloroplast)
           [Coptis japonica var. major]
           gi|388240486|dbj|BAM15739.1| maturase K (chloroplast)
           [Coptis japonica var. major]
           gi|388240488|dbj|BAM15740.1| maturase K (chloroplast)
           [Coptis japonica var. major]
          Length = 508

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 48/60 (80%), Positives = 48/60 (80%)
 Frame = +3

Query: 3   STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182
           STVRSFLNRLGS           QVLGRIKERTCSSSQ LYKEQIWYFDIIRINDLTNHS
Sbjct: 449 STVRSFLNRLGSEFLEEFLMEEEQVLGRIKERTCSSSQRLYKEQIWYFDIIRINDLTNHS 508


>emb|CCA94633.1| maturase K, partial [Erica carnea]
          Length = 196

 Score = 57.0 bits (136), Expect(2) = 3e-15
 Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +3

Query: 3   STVRSFLNRLGSXXXXXXXXXXXQVLGRIKERTCSSSQGLYKEQIWYFDIIRINDLTNHS 182
           STVR+F  RLG            QV      +  S+S  LY  +IWY DII INDL N+ 
Sbjct: 57  STVRAFSKRLGVGLLEEFFTEEEQVFYLTFPKASSTSGELYGRRIWYLDIICINDLANYE 116

Query: 183 *LVMRPCKRN*FL---NDEE 233
             +MRPCK+   +   NDEE
Sbjct: 117 WFIMRPCKQKLCINNRNDEE 136



 Score = 49.3 bits (116), Expect(2) = 3e-15
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +1

Query: 319 RELRFRFIHRESRVQLKMQARFGEGF 396
           +EL FR+IH+ESRVQLKMQARFGEGF
Sbjct: 171 KELSFRWIHKESRVQLKMQARFGEGF 196