BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039219
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    62   6e-08
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    60   2e-07
ref|XP_002531144.1| conserved hypothetical protein [Ricinus comm...    59   3e-07
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    58   7e-07
ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    57   2e-06

>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
 Frame = -3

Query: 365 NSFSVNIGALGGCLSAVDYSSPKHVVEVWTMKQYGVQESWTRQYEISMH----------- 219
           N    ++  L GCLS   Y +   + E+W MK+Y V+ESW ++Y I  +           
Sbjct: 277 NRCDYHLAVLRGCLSVAVYCNYGRL-EIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVR 335

Query: 218 --------DNVGHLRPLCLLKCGTVLFDCNWGELVLYDPGKRQIRKIGLRRSSNEPKLCF 63
                    N   +R LC+LK G +L +     LV YDP K + + I L+     PK  +
Sbjct: 336 PLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVSYDPKKGKFKDIDLQ---GTPK--W 390

Query: 62  FNVIVHSGTL 33
           F  +VH G+L
Sbjct: 391 FQTVVHVGSL 400


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
 Frame = -3

Query: 374 SMCNSFSVNIGALGGCLSAVDYSSPKHVVEVWTMKQYGVQESWTRQYEISMHDNVG---- 207
           S CN    ++  LGGCLSA  + S    +EVW MK+Y V+ESW +++ I  H   G    
Sbjct: 277 SRCN---YHLLVLGGCLSAAVHRS-NGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQD 332

Query: 206 ---------------HLRPLCLLKCGTVLFDCNWGELVLYDPGKRQIRKIGLRRSSNEPK 72
                           +R LCLLK G +L +     LV Y+P + + + + L+   N   
Sbjct: 333 VNRPHRIWRNAPKGRGVRLLCLLKNGEILLEYKGRVLVSYNPERGKFKDLTLKGLPN--- 389

Query: 71  LCFFNVIVHSGTL 33
             +F   VH G+L
Sbjct: 390 --WFQTFVHVGSL 400


>ref|XP_002531144.1| conserved hypothetical protein [Ricinus communis]
           gi|223529257|gb|EEF31229.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 389

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
 Frame = -3

Query: 374 SMCNSFSVNIGALGGCLSAVDYSSPKHVVEVWTMKQYGVQESWTRQYEI-SMHDNVGHLR 198
           S+ N F V+IG  G  L           ++VW MK+YGV+ESWT+   I  +      +R
Sbjct: 264 SVGNGFRVDIGLFGTWLCIFATDDLDMCIDVWMMKEYGVKESWTKLCSIPHIETCYDFIR 323

Query: 197 PLCLLKCGT-VLFDCNWGELVLYDPGKRQIRKIGLRRSSNEPKLCFFNVIVHSGTLVSPM 21
           PL   K G+ VL + +   +V YD  K+++R + LRRS       +F  I+   +L +P+
Sbjct: 324 PLSFWKRGSEVLLELDDARIVWYDIEKKRVRDVLLRRSQKS----YFETIICLRSL-APL 378

Query: 20  WGNE 9
             NE
Sbjct: 379 PSNE 382


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
 Frame = -3

Query: 365 NSFSVNIGALGGCLSAVDYSSPKHVVEVWTMKQYGVQESWTRQYEISMH----------- 219
           N  + ++  L GCLSA  Y +   + E+W MK+Y V+ESW ++Y I  +           
Sbjct: 278 NRCNYHLVVLRGCLSAAVYCNYGRL-EIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDR 336

Query: 218 --------DNVGHLRPLCLLKCGTVLFDCNWGELVLYDPGKRQIRKIGLRRSSNEPKLCF 63
                    N   +  LC+LK G +L +     LV YDP   + + I L+ + N     +
Sbjct: 337 QLKIWKNSSNGRVVGALCVLKNGEILLEYKNRVLVSYDPKNGKFKDIELQGAPN-----W 391

Query: 62  FNVIVHSGTL 33
           F  +VH G+L
Sbjct: 392 FQTVVHVGSL 401


>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
 Frame = -3

Query: 338 LGGCLSAVDYSSPKHVVEVWTMKQYGVQESWTRQYEISMH-------------------D 216
           L GCL AV Y +   + ++W MK YGV+ESW ++Y I  +                   +
Sbjct: 293 LKGCLCAVVYGNYGKL-DIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAE 351

Query: 215 NVGHLRPLCLLKCGTVLFDCNWGELVLYDPGKRQIRKIGLRRSSNEPKLCFFNVIVHSGT 36
           N   +R LCLL+ G +L +     LV YDP   + + +      N     +F+ +VH+GT
Sbjct: 352 NGKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFHGLPN-----WFHTVVHAGT 406

Query: 35  L 33
           L
Sbjct: 407 L 407