BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039213
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containi...   117   2e-28
ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containi...   109   3e-26
emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]   109   3e-26
emb|CBI39775.3| unnamed protein product [Vitis vinifera]              109   3e-26
ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi...   105   4e-25

>ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  117 bits (294), Expect(2) = 2e-28
 Identities = 53/103 (51%), Positives = 76/103 (73%)
 Frame = -1

Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197
           G YV+LSN+YA AG+W DVARVR  M+ + V+K PG SS+++EGVV+ F +GD +HP  E
Sbjct: 449 GYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTE 508

Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68
            I+  W++L++RMK  GY P+T V L +M+E++ E+ LYR  E
Sbjct: 509 EIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSE 551



 Score = 32.7 bits (73), Expect(2) = 2e-28
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -2

Query: 87  LYTVSEKLALTYALISSEPESPVRIVKNL 1
           LY  SEKLA+ + LI + P + +RI+KNL
Sbjct: 546 LYRHSEKLAVVFGLIKTTPGTVIRIMKNL 574


>ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  109 bits (273), Expect(2) = 3e-26
 Identities = 50/103 (48%), Positives = 72/103 (69%)
 Frame = -1

Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197
           G YV+LSN+YA AG+W D ARVR  MK + V+K PG SS+ ++GVVHEF +G++SHP  E
Sbjct: 464 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 523

Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68
            I+  W+EL++ M+  GY P+T V L +++E E  + + R  E
Sbjct: 524 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 566



 Score = 33.5 bits (75), Expect(2) = 3e-26
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -2

Query: 75  SEKLALTYALISSEPESPVRIVKNL 1
           SEKLAL + L+++  E+P+RI+KNL
Sbjct: 565 SEKLALVFGLMNTPAETPIRIMKNL 589


>emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  109 bits (273), Expect(2) = 3e-26
 Identities = 50/103 (48%), Positives = 72/103 (69%)
 Frame = -1

Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197
           G YV+LSN+YA AG+W D ARVR  MK + V+K PG SS+ ++GVVHEF +G++SHP  E
Sbjct: 464 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 523

Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68
            I+  W+EL++ M+  GY P+T V L +++E E  + + R  E
Sbjct: 524 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 566



 Score = 33.5 bits (75), Expect(2) = 3e-26
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -2

Query: 75  SEKLALTYALISSEPESPVRIVKNL 1
           SEKLAL + L+++  E+P+RI+KNL
Sbjct: 565 SEKLALVFGLMNTPAETPIRIMKNL 589


>emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  109 bits (273), Expect(2) = 3e-26
 Identities = 50/103 (48%), Positives = 72/103 (69%)
 Frame = -1

Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197
           G YV+LSN+YA AG+W D ARVR  MK + V+K PG SS+ ++GVVHEF +G++SHP  E
Sbjct: 431 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 490

Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68
            I+  W+EL++ M+  GY P+T V L +++E E  + + R  E
Sbjct: 491 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 533



 Score = 33.5 bits (75), Expect(2) = 3e-26
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -2

Query: 75  SEKLALTYALISSEPESPVRIVKNL 1
           SEKLAL + L+++  E+P+RI+KNL
Sbjct: 532 SEKLALVFGLMNTPAETPIRIMKNL 556


>ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  105 bits (262), Expect(2) = 4e-25
 Identities = 52/103 (50%), Positives = 65/103 (63%)
 Frame = -1

Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197
           G +VLLSN++AS G W DV  VR  MK Q V K PGCS +   GVVHEF +GDK+HP I 
Sbjct: 640 GFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWIN 699

Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68
            +    +E+ KR+K  GY PDT     ++DEEE E  L+R  E
Sbjct: 700 KVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSE 742



 Score = 34.3 bits (77), Expect(2) = 4e-25
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -2

Query: 87  LYTVSEKLALTYALISSEPESPVRIVKNL 1
           L+  SEKLA+ + L++  P +P+RI+KNL
Sbjct: 737 LFRHSEKLAIAFGLLTISPPTPIRIMKNL 765