BLASTX nr result
ID: Coptis24_contig00039213
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039213 (376 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containi... 117 2e-28 ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containi... 109 3e-26 emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera] 109 3e-26 emb|CBI39775.3| unnamed protein product [Vitis vinifera] 109 3e-26 ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containi... 105 4e-25 >ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] Length = 617 Score = 117 bits (294), Expect(2) = 2e-28 Identities = 53/103 (51%), Positives = 76/103 (73%) Frame = -1 Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197 G YV+LSN+YA AG+W DVARVR M+ + V+K PG SS+++EGVV+ F +GD +HP E Sbjct: 449 GYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTE 508 Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68 I+ W++L++RMK GY P+T V L +M+E++ E+ LYR E Sbjct: 509 EIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSE 551 Score = 32.7 bits (73), Expect(2) = 2e-28 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -2 Query: 87 LYTVSEKLALTYALISSEPESPVRIVKNL 1 LY SEKLA+ + LI + P + +RI+KNL Sbjct: 546 LYRHSEKLAVVFGLIKTTPGTVIRIMKNL 574 >ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera] Length = 632 Score = 109 bits (273), Expect(2) = 3e-26 Identities = 50/103 (48%), Positives = 72/103 (69%) Frame = -1 Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197 G YV+LSN+YA AG+W D ARVR MK + V+K PG SS+ ++GVVHEF +G++SHP E Sbjct: 464 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 523 Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68 I+ W+EL++ M+ GY P+T V L +++E E + + R E Sbjct: 524 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 566 Score = 33.5 bits (75), Expect(2) = 3e-26 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = -2 Query: 75 SEKLALTYALISSEPESPVRIVKNL 1 SEKLAL + L+++ E+P+RI+KNL Sbjct: 565 SEKLALVFGLMNTPAETPIRIMKNL 589 >emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera] Length = 606 Score = 109 bits (273), Expect(2) = 3e-26 Identities = 50/103 (48%), Positives = 72/103 (69%) Frame = -1 Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197 G YV+LSN+YA AG+W D ARVR MK + V+K PG SS+ ++GVVHEF +G++SHP E Sbjct: 464 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 523 Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68 I+ W+EL++ M+ GY P+T V L +++E E + + R E Sbjct: 524 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 566 Score = 33.5 bits (75), Expect(2) = 3e-26 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = -2 Query: 75 SEKLALTYALISSEPESPVRIVKNL 1 SEKLAL + L+++ E+P+RI+KNL Sbjct: 565 SEKLALVFGLMNTPAETPIRIMKNL 589 >emb|CBI39775.3| unnamed protein product [Vitis vinifera] Length = 599 Score = 109 bits (273), Expect(2) = 3e-26 Identities = 50/103 (48%), Positives = 72/103 (69%) Frame = -1 Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197 G YV+LSN+YA AG+W D ARVR MK + V+K PG SS+ ++GVVHEF +G++SHP E Sbjct: 431 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 490 Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68 I+ W+EL++ M+ GY P+T V L +++E E + + R E Sbjct: 491 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 533 Score = 33.5 bits (75), Expect(2) = 3e-26 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = -2 Query: 75 SEKLALTYALISSEPESPVRIVKNL 1 SEKLAL + L+++ E+P+RI+KNL Sbjct: 532 SEKLALVFGLMNTPAETPIRIMKNL 556 >ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] Length = 808 Score = 105 bits (262), Expect(2) = 4e-25 Identities = 52/103 (50%), Positives = 65/103 (63%) Frame = -1 Query: 376 GNYVLLSNVYASAGKWRDVARVRACMKAQHVQKAPGCSSVVIEGVVHEFTSGDKSHPSIE 197 G +VLLSN++AS G W DV VR MK Q V K PGCS + GVVHEF +GDK+HP I Sbjct: 640 GFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWIN 699 Query: 196 VIYNAWDELVKRMKHMGYEPDTGVSLRNMDEEESEQALYRQ*E 68 + +E+ KR+K GY PDT ++DEEE E L+R E Sbjct: 700 KVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSE 742 Score = 34.3 bits (77), Expect(2) = 4e-25 Identities = 14/29 (48%), Positives = 22/29 (75%) Frame = -2 Query: 87 LYTVSEKLALTYALISSEPESPVRIVKNL 1 L+ SEKLA+ + L++ P +P+RI+KNL Sbjct: 737 LFRHSEKLAIAFGLLTISPPTPIRIMKNL 765