BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039195
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512521.1| pentatricopeptide repeat-containing protein,...   134   6e-30
ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2...   133   1e-29
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
emb|CBI39605.3| unnamed protein product [Vitis vinifera]              124   8e-27

>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 422

 Score =  134 bits (338), Expect = 6e-30
 Identities = 59/86 (68%), Positives = 76/86 (88%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           DMYAKCGRL++AW+VFE MK+KEVFTWNAMI GLAMHGRA+DAI LFL MQ+++ R+++I
Sbjct: 335 DMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEI 394

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           TF+G+LNACAH G+V+EGL    +M+
Sbjct: 395 TFVGLLNACAHKGMVDEGLNILDSME 420



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/81 (34%), Positives = 51/81 (62%)
 Frame = +3

Query: 12  AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191
           AK G ++ A E+F +M++K+  +W++MI G    G  ++A+++F  MQ ++ R  K    
Sbjct: 237 AKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLS 296

Query: 192 GVLNACAHAGLVEEGLQYFHA 254
            VL ACA+ G +++G ++ HA
Sbjct: 297 SVLAACANLGALDQG-RWIHA 316



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/86 (32%), Positives = 52/86 (60%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           D Y K G ++ A E+FE M+ + V +WN M+ GLA +G  ++A +LF +M+ +    D+I
Sbjct: 203 DGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREK----DEI 258

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           ++  +++     G  +E L+ F+ M+
Sbjct: 259 SWSSMIDGYIKGGNYKEALEVFNVMQ 284


>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score =  133 bits (335), Expect = 1e-29
 Identities = 58/86 (67%), Positives = 77/86 (89%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           DMYAKCGRL++AW+VFE M++KEVFTWNAMI GL MHGRA+DAI+LF  MQ+Q+FR + I
Sbjct: 336 DMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGI 395

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           T +GVL+ACAH+G+V+EGL+ F++M+
Sbjct: 396 TLLGVLSACAHSGMVDEGLRIFNSME 421



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/81 (40%), Positives = 50/81 (61%)
 Frame = +3

Query: 12  AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191
           AKCG +E A E+F  MK+K   +W+AMI G    G  ++A+++F  MQR+  R  K    
Sbjct: 238 AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLS 297

Query: 192 GVLNACAHAGLVEEGLQYFHA 254
            VL ACA+ G +++G ++ HA
Sbjct: 298 SVLAACANLGALDQG-RWIHA 317



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 51/86 (59%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           D Y KCG +E A E+F +M+ K V +WN M+ G+A  G  ++A +LF  M+ +    ++I
Sbjct: 204 DGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEK----NEI 259

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           ++  +++     G  +E L+ F+ M+
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQ 285


>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  127 bits (318), Expect = 1e-27
 Identities = 54/86 (62%), Positives = 71/86 (82%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           DMYAKCGRL++ WEVFE MK++E+FTWNAMIGGLA+HGRA+DA++LF  +Q  R + + I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           T +GVL ACAHAG V++GL+ F  M+
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMR 422



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/81 (32%), Positives = 50/81 (61%)
 Frame = +3

Query: 12  AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191
           AK G L  A ++F+ M +++  +W++M+ G    GR ++A+++F  MQR+  R  +    
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 192 GVLNACAHAGLVEEGLQYFHA 254
            VL AC++ G +++G ++ HA
Sbjct: 299 SVLAACSNIGAIDQG-RWVHA 318


>ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  127 bits (318), Expect = 1e-27
 Identities = 54/86 (62%), Positives = 71/86 (82%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           DMYAKCGRL++ WEVFE MK++E+FTWNAMIGGLA+HGRA+DA++LF  +Q  R + + I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           T +GVL ACAHAG V++GL+ F  M+
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMR 422



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/81 (32%), Positives = 50/81 (61%)
 Frame = +3

Query: 12  AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191
           AK G L  A ++F+ M +++  +W++M+ G    GR ++A+++F  MQR+  R  +    
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 192 GVLNACAHAGLVEEGLQYFHA 254
            VL AC++ G +++G ++ HA
Sbjct: 299 SVLAACSNIGAIDQG-RWVHA 318


>emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  124 bits (311), Expect = 8e-27
 Identities = 58/86 (67%), Positives = 70/86 (81%)
 Frame = +3

Query: 3   DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182
           DMYAKCGR++LAWEVFE M  KEV +WNAMIGGLAMHGRA+DAIDLF  M       ++I
Sbjct: 297 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEI 353

Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260
           TF+GVLNACAH GLV++GL  F++M+
Sbjct: 354 TFVGVLNACAHGGLVQKGLTIFNSMR 379