BLASTX nr result
ID: Coptis24_contig00039195
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039195 (262 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002512521.1| pentatricopeptide repeat-containing protein,... 134 6e-30 ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2... 133 1e-29 ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi... 127 1e-27 ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi... 127 1e-27 emb|CBI39605.3| unnamed protein product [Vitis vinifera] 124 8e-27 >ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 422 Score = 134 bits (338), Expect = 6e-30 Identities = 59/86 (68%), Positives = 76/86 (88%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 DMYAKCGRL++AW+VFE MK+KEVFTWNAMI GLAMHGRA+DAI LFL MQ+++ R+++I Sbjct: 335 DMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEI 394 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 TF+G+LNACAH G+V+EGL +M+ Sbjct: 395 TFVGLLNACAHKGMVDEGLNILDSME 420 Score = 58.2 bits (139), Expect = 7e-07 Identities = 28/81 (34%), Positives = 51/81 (62%) Frame = +3 Query: 12 AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191 AK G ++ A E+F +M++K+ +W++MI G G ++A+++F MQ ++ R K Sbjct: 237 AKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLS 296 Query: 192 GVLNACAHAGLVEEGLQYFHA 254 VL ACA+ G +++G ++ HA Sbjct: 297 SVLAACANLGALDQG-RWIHA 316 Score = 55.1 bits (131), Expect = 6e-06 Identities = 28/86 (32%), Positives = 52/86 (60%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 D Y K G ++ A E+FE M+ + V +WN M+ GLA +G ++A +LF +M+ + D+I Sbjct: 203 DGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREK----DEI 258 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 ++ +++ G +E L+ F+ M+ Sbjct: 259 SWSSMIDGYIKGGNYKEALEVFNVMQ 284 >ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa] Length = 665 Score = 133 bits (335), Expect = 1e-29 Identities = 58/86 (67%), Positives = 77/86 (89%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 DMYAKCGRL++AW+VFE M++KEVFTWNAMI GL MHGRA+DAI+LF MQ+Q+FR + I Sbjct: 336 DMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGI 395 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 T +GVL+ACAH+G+V+EGL+ F++M+ Sbjct: 396 TLLGVLSACAHSGMVDEGLRIFNSME 421 Score = 65.9 bits (159), Expect = 3e-09 Identities = 33/81 (40%), Positives = 50/81 (61%) Frame = +3 Query: 12 AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191 AKCG +E A E+F MK+K +W+AMI G G ++A+++F MQR+ R K Sbjct: 238 AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLS 297 Query: 192 GVLNACAHAGLVEEGLQYFHA 254 VL ACA+ G +++G ++ HA Sbjct: 298 SVLAACANLGALDQG-RWIHA 317 Score = 56.6 bits (135), Expect = 2e-06 Identities = 28/86 (32%), Positives = 51/86 (59%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 D Y KCG +E A E+F +M+ K V +WN M+ G+A G ++A +LF M+ + ++I Sbjct: 204 DGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEK----NEI 259 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 ++ +++ G +E L+ F+ M+ Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQ 285 >ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] Length = 666 Score = 127 bits (318), Expect = 1e-27 Identities = 54/86 (62%), Positives = 71/86 (82%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 DMYAKCGRL++ WEVFE MK++E+FTWNAMIGGLA+HGRA+DA++LF +Q R + + I Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 T +GVL ACAHAG V++GL+ F M+ Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMR 422 Score = 56.6 bits (135), Expect = 2e-06 Identities = 26/81 (32%), Positives = 50/81 (61%) Frame = +3 Query: 12 AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191 AK G L A ++F+ M +++ +W++M+ G GR ++A+++F MQR+ R + Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298 Query: 192 GVLNACAHAGLVEEGLQYFHA 254 VL AC++ G +++G ++ HA Sbjct: 299 SVLAACSNIGAIDQG-RWVHA 318 >ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] Length = 666 Score = 127 bits (318), Expect = 1e-27 Identities = 54/86 (62%), Positives = 71/86 (82%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 DMYAKCGRL++ WEVFE MK++E+FTWNAMIGGLA+HGRA+DA++LF +Q R + + I Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 T +GVL ACAHAG V++GL+ F M+ Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMR 422 Score = 56.6 bits (135), Expect = 2e-06 Identities = 26/81 (32%), Positives = 50/81 (61%) Frame = +3 Query: 12 AKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKITFI 191 AK G L A ++F+ M +++ +W++M+ G GR ++A+++F MQR+ R + Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298 Query: 192 GVLNACAHAGLVEEGLQYFHA 254 VL AC++ G +++G ++ HA Sbjct: 299 SVLAACSNIGAIDQG-RWVHA 318 >emb|CBI39605.3| unnamed protein product [Vitis vinifera] Length = 624 Score = 124 bits (311), Expect = 8e-27 Identities = 58/86 (67%), Positives = 70/86 (81%) Frame = +3 Query: 3 DMYAKCGRLELAWEVFENMKQKEVFTWNAMIGGLAMHGRAQDAIDLFLNMQRQRFRADKI 182 DMYAKCGR++LAWEVFE M KEV +WNAMIGGLAMHGRA+DAIDLF M ++I Sbjct: 297 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEI 353 Query: 183 TFIGVLNACAHAGLVEEGLQYFHAMK 260 TF+GVLNACAH GLV++GL F++M+ Sbjct: 354 TFVGVLNACAHGGLVQKGLTIFNSMR 379