BLASTX nr result
ID: Coptis24_contig00039173
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039173
(312 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002529554.1| pentatricopeptide repeat-containing protein,... 161 4e-38
emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera] 160 8e-38
emb|CBI35789.3| unnamed protein product [Vitis vinifera] 159 2e-37
ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containi... 159 2e-37
ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containi... 152 3e-35
>ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530966|gb|EEF32823.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 678
Score = 161 bits (408), Expect = 4e-38
Identities = 77/103 (74%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Frame = +1
Query: 4 FAYGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKE 183
FAY MIDSLCRAG+NHGASRIVY+M+KKG PSLVSYN I+HGL K+RGCMRAYQLF+E
Sbjct: 312 FAYAHMIDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSIIHGLCKERGCMRAYQLFEE 371
Query: 184 GIEFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGK-GLD 309
GIEFGY PSE TYKVLVEALC+E D+DKA+ +++ ML K G+D
Sbjct: 372 GIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDGVD 414
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 19 MIDSLCRAGQNHGASRIVY-IMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEF 195
+I L AG++ A ++Y +M +KG P + +YN ++HGL K + A + FK +
Sbjct: 493 IIAGLLNAGRSQEALNLLYKVMHEKGISPGVETYNAVIHGLFKLQLAEEAMRAFKRMLAA 552
Query: 196 GYSPSEATYKVLVEALCRESDIDKAKDL 279
G + TY ++++ LC IDKAK L
Sbjct: 553 GVAADSKTYTLIIDGLCESGLIDKAKKL 580
>emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]
Length = 959
Score = 160 bits (406), Expect = 8e-38
Identities = 76/103 (73%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Frame = +1
Query: 4 FAYGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKE 183
FAYGQMIDSLCR G+NHGASRIVYIMRK+GF PSLVSYN I+HGL+K+ GCMRAYQL KE
Sbjct: 604 FAYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKE 663
Query: 184 GIEFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGK-GLD 309
G+EFGY SE TYKVL+EALCR++D+ KA++++Q+ML K G+D
Sbjct: 664 GVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVD 706
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/100 (30%), Positives = 55/100 (55%)
Frame = +1
Query: 10 YGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGI 189
Y ++I LC Q + A + + MR +G P+ VSY ++ G K A++LF E +
Sbjct: 461 YNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEML 520
Query: 190 EFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGKGLD 309
E G P+ TY VL++ + + D+++ ++L+ + K +D
Sbjct: 521 ESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMD 560
>emb|CBI35789.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 159 bits (402), Expect = 2e-37
Identities = 75/103 (72%), Positives = 91/103 (88%), Gaps = 1/103 (0%)
Frame = +1
Query: 4 FAYGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKE 183
F YGQMIDSLCR G+NHGASRIVYIMRK+GF PSLVSYN I+HGL+K+ GCMRAYQL KE
Sbjct: 546 FVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKE 605
Query: 184 GIEFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGK-GLD 309
G+EFGY SE TYKVL+EALCR++D+ KA++++Q+ML K G+D
Sbjct: 606 GVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVD 648
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/100 (30%), Positives = 55/100 (55%)
Frame = +1
Query: 10 YGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGI 189
Y ++I LC Q + A + + MR +G P+ VSY ++ G K A++LF E +
Sbjct: 403 YNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEML 462
Query: 190 EFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGKGLD 309
E G P+ TY VL++ + + D+++ ++L+ + K +D
Sbjct: 463 ESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMD 502
>ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Vitis vinifera]
Length = 680
Score = 159 bits (402), Expect = 2e-37
Identities = 75/103 (72%), Positives = 91/103 (88%), Gaps = 1/103 (0%)
Frame = +1
Query: 4 FAYGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKE 183
F YGQMIDSLCR G+NHGASRIVYIMRK+GF PSLVSYN I+HGL+K+ GCMRAYQL KE
Sbjct: 314 FVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKE 373
Query: 184 GIEFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGK-GLD 309
G+EFGY SE TYKVL+EALCR++D+ KA++++Q+ML K G+D
Sbjct: 374 GVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVD 416
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/100 (30%), Positives = 55/100 (55%)
Frame = +1
Query: 10 YGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGI 189
Y ++I LC Q + A + + MR +G P+ VSY ++ G K A++LF E +
Sbjct: 171 YNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEML 230
Query: 190 EFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGKGLD 309
E G P+ TY VL++ + + D+++ ++L+ + K +D
Sbjct: 231 ESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMD 270
>ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Cucumis sativus]
Length = 681
Score = 152 bits (384), Expect = 3e-35
Identities = 74/103 (71%), Positives = 87/103 (84%), Gaps = 1/103 (0%)
Frame = +1
Query: 4 FAYGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKE 183
FAYGQMIDSLC+A + HGASRIVYIMRKKG P L+SYN I+HGL+K+ GCMRAYQL E
Sbjct: 307 FAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVE 366
Query: 184 GIEFGYSPSEATYKVLVEALCRESDIDKAKDLLQIMLGK-GLD 309
G+EFGYSPSE TYKVL+E LC+E D KAK++LQIM+ K G+D
Sbjct: 367 GVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMIHKQGVD 409