BLASTX nr result
ID: Coptis24_contig00039162
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039162 (269 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002337566.1| light harvesting protein 3 [Populus trichoca... 73 3e-11 ref|XP_002275690.1| PREDICTED: uncharacterized protein LOC100259... 68 7e-10 ref|XP_002511036.1| transcription factor, putative [Ricinus comm... 67 2e-09 emb|CBI26582.3| unnamed protein product [Vitis vinifera] 61 8e-08 >ref|XP_002337566.1| light harvesting protein 3 [Populus trichocarpa] gi|222839577|gb|EEE77914.1| light harvesting protein 3 [Populus trichocarpa] Length = 249 Score = 72.8 bits (177), Expect = 3e-11 Identities = 37/88 (42%), Positives = 50/88 (56%) Frame = -1 Query: 269 KKHNSILRPTCSLGAMHASNVATIDVESKKMVNMTETHERPVVLKTEPVAIKSESMPGTE 90 KK R SLG+ A+ T++VE ++ V M+E E+P + + G E Sbjct: 21 KKQRPQARTARSLGSKQATRAVTLNVEGQRGVGMSEQQEKPALATGGSNKANDKLENGLE 80 Query: 89 TELSDPMFSDERWKNGTWDLNMFVKNGK 6 T+ S P F DERWK GTWDLNMFV++GK Sbjct: 81 TKHSVPKFIDERWKKGTWDLNMFVRDGK 108 >ref|XP_002275690.1| PREDICTED: uncharacterized protein LOC100259582 [Vitis vinifera] Length = 259 Score = 68.2 bits (165), Expect = 7e-10 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Frame = -1 Query: 269 KKHNSILRPTCSLGAMHASNVATIDVESKKMVNMTETHER------PVVLKTEPVAIKSE 108 KK RP S+G ++V ++ E K +N+ E + + E Sbjct: 22 KKQQPQARPARSMGTKQETHVVALETEGPKGLNIAEQEAKFGFNAGSSTTTSRDAKDDDE 81 Query: 107 SMPGTETELSDPMFSDERWKNGTWDLNMFVKNGK 6 + G +TE S P FSDERWKNGTWDLNMFV++GK Sbjct: 82 AGSGLDTEPSAPKFSDERWKNGTWDLNMFVRDGK 115 >ref|XP_002511036.1| transcription factor, putative [Ricinus communis] gi|223550151|gb|EEF51638.1| transcription factor, putative [Ricinus communis] Length = 240 Score = 67.0 bits (162), Expect = 2e-09 Identities = 34/86 (39%), Positives = 48/86 (55%) Frame = -1 Query: 269 KKHNSILRPTCSLGAMHASNVATIDVESKKMVNMTETHERPVVLKTEPVAIKSESMPGTE 90 KK RP LG ++V T++VE +K ++++E E+P + +S G E Sbjct: 21 KKQQPQARPARPLGTKQVTHVVTLNVEGQKGLSISEQQEKPPLDANGSKRADDKSDHGPE 80 Query: 89 TELSDPMFSDERWKNGTWDLNMFVKN 12 E S P F DERW+ G WDLNMFVK+ Sbjct: 81 AESSTPTFIDERWQMGNWDLNMFVKD 106 >emb|CBI26582.3| unnamed protein product [Vitis vinifera] Length = 226 Score = 61.2 bits (147), Expect = 8e-08 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 6/82 (7%) Frame = -1 Query: 233 LGAMHASNVATIDVESKKMVNMTETHER------PVVLKTEPVAIKSESMPGTETELSDP 72 +G ++V ++ E K +N+ E + + E+ G +TE S P Sbjct: 1 MGTKQETHVVALETEGPKGLNIAEQEAKFGFNAGSSTTTSRDAKDDDEAGSGLDTEPSAP 60 Query: 71 MFSDERWKNGTWDLNMFVKNGK 6 FSDERWKNGTWDLNMFV++GK Sbjct: 61 KFSDERWKNGTWDLNMFVRDGK 82