BLASTX nr result
ID: Coptis24_contig00039129
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039129 (300 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABW81094.1| RT6non-ltr [Cleome spinosa] 67 2e-09 gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 63 3e-08 gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 60 2e-07 dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 60 2e-07 gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 60 2e-07 >gb|ABW81094.1| RT6non-ltr [Cleome spinosa] Length = 459 Score = 67.0 bits (162), Expect = 2e-09 Identities = 30/76 (39%), Positives = 48/76 (63%) Frame = -3 Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62 +N KC++FL ++ + + + I G+ P KYLG+P+ R+TKA PL++KIR Sbjct: 100 VNTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRA 159 Query: 61 KASGWAGKLLSFQGRV 14 K S W+ KLLS+ G++ Sbjct: 160 KVSNWSSKLLSYAGKI 175 >gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1352 Score = 62.8 bits (151), Expect = 3e-08 Identities = 30/76 (39%), Positives = 49/76 (64%) Frame = -3 Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62 I+ +K IF++ +S +T I + + G+LP KYLG+PL+ R+T++ PLV+KIR Sbjct: 883 ISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRA 942 Query: 61 KASGWAGKLLSFQGRV 14 + + W + LSF GR+ Sbjct: 943 RITSWTNRFLSFAGRL 958 >gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] Length = 1161 Score = 60.1 bits (144), Expect = 2e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = -3 Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62 IN++K ++ L + R + + L I GSLP +YLGVPL+ ++ + PLVD+I Sbjct: 773 INREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINS 832 Query: 61 KASGWAGKLLSFQGRV 14 + + W + LSF GR+ Sbjct: 833 RFTSWTARHLSFAGRL 848 >dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 910 Score = 60.1 bits (144), Expect = 2e-07 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = -3 Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62 IN++K ++ L + R + + L I GSLP +YLGVPL+ ++ + PLVD+I Sbjct: 730 INREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINS 789 Query: 61 KASGWAGKLLSFQGRV 14 + + W + LSF GR+ Sbjct: 790 RFTSWTARHLSFAGRL 805 >gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 543 Score = 60.1 bits (144), Expect = 2e-07 Identities = 29/76 (38%), Positives = 44/76 (57%) Frame = -3 Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62 IN K + L + R I+ +L + +GSLP +YLGVPL+ ++ K PLVD+I Sbjct: 277 INLQKTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINS 336 Query: 61 KASGWAGKLLSFQGRV 14 + + W + LSF GR+ Sbjct: 337 RFTSWTARHLSFAGRL 352