BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039129
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             67   2e-09
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    63   3e-08
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               60   2e-07
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...    60   2e-07
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali...    60   2e-07

>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 30/76 (39%), Positives = 48/76 (63%)
 Frame = -3

Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62
           +N  KC++FL  ++   +  +   + I  G+ P KYLG+P+   R+TKA   PL++KIR 
Sbjct: 100 VNTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRA 159

Query: 61  KASGWAGKLLSFQGRV 14
           K S W+ KLLS+ G++
Sbjct: 160 KVSNWSSKLLSYAGKI 175


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/76 (39%), Positives = 49/76 (64%)
 Frame = -3

Query: 241  INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62
            I+ +K  IF++ +S   +T I +    + G+LP KYLG+PL+  R+T++   PLV+KIR 
Sbjct: 883  ISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRA 942

Query: 61   KASGWAGKLLSFQGRV 14
            + + W  + LSF GR+
Sbjct: 943  RITSWTNRFLSFAGRL 958


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = -3

Query: 241  INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62
            IN++K ++ L   +  R   + + L I  GSLP +YLGVPL+  ++ +    PLVD+I  
Sbjct: 773  INREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINS 832

Query: 61   KASGWAGKLLSFQGRV 14
            + + W  + LSF GR+
Sbjct: 833  RFTSWTARHLSFAGRL 848


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = -3

Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62
           IN++K ++ L   +  R   + + L I  GSLP +YLGVPL+  ++ +    PLVD+I  
Sbjct: 730 INREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINS 789

Query: 61  KASGWAGKLLSFQGRV 14
           + + W  + LSF GR+
Sbjct: 790 RFTSWTARHLSFAGRL 805


>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 543

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/76 (38%), Positives = 44/76 (57%)
 Frame = -3

Query: 241 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 62
           IN  K  + L   +  R  I+  +L + +GSLP +YLGVPL+  ++ K    PLVD+I  
Sbjct: 277 INLQKTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINS 336

Query: 61  KASGWAGKLLSFQGRV 14
           + + W  + LSF GR+
Sbjct: 337 RFTSWTARHLSFAGRL 352