BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039119
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    67   2e-09
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    66   3e-09
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    62   6e-08
ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    61   1e-07

>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +1

Query: 61   VTRDEVIEELSCIESCIDSDKAPGSDGFTALFFKAAWRIVGDDFVKAIQNFFRSGAMLKE 240
            +TR    EE+  +   + +DK+PG DGFT+ FFKA W I+G++F+ AIQ+FF  G + K 
Sbjct: 857  LTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKG 916

Query: 241  INTT 252
            INTT
Sbjct: 917  INTT 920


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 33/71 (46%), Positives = 47/71 (66%)
 Frame = +1

Query: 40  QQKVIASVTRDEVIEELSCIESCIDSDKAPGSDGFTALFFKAAWRIVGDDFVKAIQNFFR 219
           QQ +I  VT +E+ + L  + S    DK+PG DG+T+ FFKA W I+GD+F  A+Q+FF 
Sbjct: 446 QQSLIRPVTAEEIRKVLFRMPS----DKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFT 501

Query: 220 SGAMLKEINTT 252
            G + K IN+T
Sbjct: 502 KGFLPKGINST 512


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 27/57 (47%), Positives = 40/57 (70%)
 Frame = +1

Query: 82  EELSCIESCIDSDKAPGSDGFTALFFKAAWRIVGDDFVKAIQNFFRSGAMLKEINTT 252
           EE+  +   + +DK+PG DG+TA F+K AW I+G +F+ AIQ+FF  G + K IN+T
Sbjct: 344 EEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINST 400


>ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|222874272|gb|EEF11403.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
 Frame = +1

Query: 40  QQKVIASV-TRDEVIEELSCIESCIDSDKAPGSDGFTALFFKAAWRIVGDDFVKAIQNFF 216
           QQ V+A V TR E+   +  +++    +KAPG DGF A FFK  W IVG+D + A+++ F
Sbjct: 406 QQHVLAQVVTRKEIKHAMFSLKN----NKAPGLDGFNAGFFKRMWHIVGEDVINAVRSLF 461

Query: 217 RSGAMLKEINTT 252
           ++  MLKE+N T
Sbjct: 462 QTRRMLKEMNAT 473


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 27/64 (42%), Positives = 43/64 (67%)
 Frame = +1

Query: 61  VTRDEVIEELSCIESCIDSDKAPGSDGFTALFFKAAWRIVGDDFVKAIQNFFRSGAMLKE 240
           +TR    EE+  +   +  DK+PG DG+T+ F+KA+W I+GD+ + AIQ+FF  G + K 
Sbjct: 170 LTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKG 229

Query: 241 INTT 252
           +N+T
Sbjct: 230 VNST 233