BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039084
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...   109   2e-22
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar...   103   2e-20
dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana]                   103   2e-20

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  120 bits (301), Expect = 1e-25
 Identities = 51/88 (57%), Positives = 75/88 (85%)
 Frame = +3

Query: 3   EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182
           ++IHS VI  G+N +I V NS++A+YAKCG+LS ARRFFE +D +D V+WNSII+GYC++
Sbjct: 205 KLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQK 264

Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266
           G+ E++ +LF++M+ EG+EPG++TWNIL
Sbjct: 265 GELEKSHQLFEKMQEEGIEPGLVTWNIL 292



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 37/86 (43%), Positives = 51/86 (59%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           +HS  +  G    + V NSL+ MY+K G+L  ARR F+ +  KD  TWNS+I GYC+ G 
Sbjct: 378 LHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGY 437

Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266
             +A  LF +M    V P V+TWN +
Sbjct: 438 CGKAYDLFIKMHESDVPPNVVTWNAM 463



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 31/78 (39%), Positives = 48/78 (61%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           IH  ++   L S + V N L+  YAK G +  A+  F+ + +KD ++WNS+I+GY   G 
Sbjct: 550 IHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGC 609

Query: 189 NEEALRLFDRMRAEGVEP 242
           ++ AL LFD+M   GV+P
Sbjct: 610 SDSALDLFDQMTKMGVKP 627


>ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  111 bits (278), Expect = 5e-23
 Identities = 47/87 (54%), Positives = 69/87 (79%)
 Frame = +3

Query: 6   VIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRG 185
           +IHS VI  G+ SS+HV NS++A+YAKCG++S A + F  +D ++ V+WN II+GYC+RG
Sbjct: 205 LIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRG 264

Query: 186 KNEEALRLFDRMRAEGVEPGVITWNIL 266
           + E+A + FD M+ EG+EPG++TWNIL
Sbjct: 265 EIEQAQKYFDAMQEEGMEPGLVTWNIL 291



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/86 (40%), Positives = 52/86 (60%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           IHS  + + +   I + NSL+ MYAK G L AA+  F+ +  +D  +WNSII GYC+ G 
Sbjct: 377 IHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGF 436

Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266
             +A  LF +M+     P V+TWN++
Sbjct: 437 CGKAHELFMKMQESDSPPNVVTWNVM 462



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 33/82 (40%), Positives = 49/82 (59%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           IH       L S + V N+ +  YAK G +  +R+ F+ L  KD ++WNS++SGY   G 
Sbjct: 549 IHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLSPKDIISWNSLLSGYVLHGC 608

Query: 189 NEEALRLFDRMRAEGVEPGVIT 254
           +E AL LFD+MR +G+ P  +T
Sbjct: 609 SESALDLFDQMRKDGLHPSRVT 630


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score =  109 bits (273), Expect = 2e-22
 Identities = 48/88 (54%), Positives = 66/88 (75%)
 Frame = +3

Query: 3   EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182
           E++HS  I  G++    V NS++A+YAKCGKLS A + FE +D  +T  WN++ISGYC+ 
Sbjct: 194 EMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLASKCFEMMDKSETAAWNALISGYCQH 253

Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266
           G+ EEA RLFD MR EG+EPG+++WNIL
Sbjct: 254 GQIEEAQRLFDAMREEGIEPGLVSWNIL 281



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 36/84 (42%), Positives = 50/84 (59%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           IH+  +  G    + V NSL+ MY+KCGKL  A + F+ +  KD  TWNS+I GYC+ G 
Sbjct: 367 IHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGY 426

Query: 189 NEEALRLFDRMRAEGVEPGVITWN 260
             +A  LF +M+    +P  ITWN
Sbjct: 427 CGKAHMLFMKMQKSETQPNAITWN 450



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/85 (38%), Positives = 52/85 (61%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           IH  VI   L+S + + NSL+  YAK G +  +R  F+    KD +TWNS+I+GY   G 
Sbjct: 539 IHGCVIRRNLDSLLPITNSLIDTYAKSGNIGYSRTIFDRALFKDFITWNSLIAGYVLFGC 598

Query: 189 NEEALRLFDRMRAEGVEPGVITWNI 263
           ++ AL L D+M+  G++P   T+++
Sbjct: 599 SDAALGLVDQMKKLGIKPNRSTFSL 623


>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
           gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
           [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 894

 Score =  103 bits (256), Expect = 2e-20
 Identities = 43/88 (48%), Positives = 63/88 (71%)
 Frame = +3

Query: 3   EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182
           +VIHS VI  G++S + V NS++A+YAKCG+L  A +FF  +  +D + WNS++  YC+ 
Sbjct: 201 KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQN 260

Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266
           GK+EEA+ L   M  EG+ PG++TWNIL
Sbjct: 261 GKHEEAVELVKEMEKEGISPGLVTWNIL 288



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 39/86 (45%), Positives = 54/86 (62%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           +HS  +  G    + V NSLV MY+KCGKL  AR+ F+ +  KD  TWNS+I+GYC+ G 
Sbjct: 374 VHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGY 433

Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266
             +A  LF RM+   + P +ITWN +
Sbjct: 434 CGKAYELFTRMQDANLRPNIITWNTM 459



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 47/78 (60%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           IH  V+   L++   VKN+L   YAK G +  +R  F  ++TKD +TWNS+I GY   G 
Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGS 605

Query: 189 NEEALRLFDRMRAEGVEP 242
              AL LF++M+ +G+ P
Sbjct: 606 YGPALALFNQMKTQGITP 623


>dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana]
          Length = 328

 Score =  103 bits (256), Expect = 2e-20
 Identities = 43/88 (48%), Positives = 63/88 (71%)
 Frame = +3

Query: 3   EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182
           +VIHS VI  G++S + V NS++A+YAKCG+L  A +FF  +  +D + WNS++  YC+ 
Sbjct: 30  KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQN 89

Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266
           GK+EEA+ L   M  EG+ PG++TWNIL
Sbjct: 90  GKHEEAVELVKEMEKEGISPGLVTWNIL 117



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 39/86 (45%), Positives = 54/86 (62%)
 Frame = +3

Query: 9   IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188
           +HS  +  G    + V NSLV MY+KCGKL  AR+ F+ +  KD  TWNS+I+GYC+ G 
Sbjct: 203 VHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGY 262

Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266
             +A  LF RM+   + P +ITWN +
Sbjct: 263 CGKAYELFTRMQDANLRPNIITWNTM 288