BLASTX nr result
ID: Coptis24_contig00039084
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00039084 (268 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25 ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi... 111 5e-23 ref|XP_002510452.1| pentatricopeptide repeat-containing protein,... 109 2e-22 ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar... 103 2e-20 dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana] 103 2e-20 >ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera] Length = 1545 Score = 120 bits (301), Expect = 1e-25 Identities = 51/88 (57%), Positives = 75/88 (85%) Frame = +3 Query: 3 EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182 ++IHS VI G+N +I V NS++A+YAKCG+LS ARRFFE +D +D V+WNSII+GYC++ Sbjct: 205 KLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQK 264 Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266 G+ E++ +LF++M+ EG+EPG++TWNIL Sbjct: 265 GELEKSHQLFEKMQEEGIEPGLVTWNIL 292 Score = 77.0 bits (188), Expect = 1e-12 Identities = 37/86 (43%), Positives = 51/86 (59%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 +HS + G + V NSL+ MY+K G+L ARR F+ + KD TWNS+I GYC+ G Sbjct: 378 LHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGY 437 Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266 +A LF +M V P V+TWN + Sbjct: 438 CGKAYDLFIKMHESDVPPNVVTWNAM 463 Score = 68.2 bits (165), Expect = 7e-10 Identities = 31/78 (39%), Positives = 48/78 (61%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 IH ++ L S + V N L+ YAK G + A+ F+ + +KD ++WNS+I+GY G Sbjct: 550 IHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGC 609 Query: 189 NEEALRLFDRMRAEGVEP 242 ++ AL LFD+M GV+P Sbjct: 610 SDSALDLFDQMTKMGVKP 627 >ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Glycine max] Length = 945 Score = 111 bits (278), Expect = 5e-23 Identities = 47/87 (54%), Positives = 69/87 (79%) Frame = +3 Query: 6 VIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRG 185 +IHS VI G+ SS+HV NS++A+YAKCG++S A + F +D ++ V+WN II+GYC+RG Sbjct: 205 LIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRG 264 Query: 186 KNEEALRLFDRMRAEGVEPGVITWNIL 266 + E+A + FD M+ EG+EPG++TWNIL Sbjct: 265 EIEQAQKYFDAMQEEGMEPGLVTWNIL 291 Score = 74.7 bits (182), Expect = 7e-12 Identities = 35/86 (40%), Positives = 52/86 (60%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 IHS + + + I + NSL+ MYAK G L AA+ F+ + +D +WNSII GYC+ G Sbjct: 377 IHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGF 436 Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266 +A LF +M+ P V+TWN++ Sbjct: 437 CGKAHELFMKMQESDSPPNVVTWNVM 462 Score = 71.2 bits (173), Expect = 8e-11 Identities = 33/82 (40%), Positives = 49/82 (59%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 IH L S + V N+ + YAK G + +R+ F+ L KD ++WNS++SGY G Sbjct: 549 IHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLSPKDIISWNSLLSGYVLHGC 608 Query: 189 NEEALRLFDRMRAEGVEPGVIT 254 +E AL LFD+MR +G+ P +T Sbjct: 609 SESALDLFDQMRKDGLHPSRVT 630 >ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 1218 Score = 109 bits (273), Expect = 2e-22 Identities = 48/88 (54%), Positives = 66/88 (75%) Frame = +3 Query: 3 EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182 E++HS I G++ V NS++A+YAKCGKLS A + FE +D +T WN++ISGYC+ Sbjct: 194 EMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLASKCFEMMDKSETAAWNALISGYCQH 253 Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266 G+ EEA RLFD MR EG+EPG+++WNIL Sbjct: 254 GQIEEAQRLFDAMREEGIEPGLVSWNIL 281 Score = 77.0 bits (188), Expect = 1e-12 Identities = 36/84 (42%), Positives = 50/84 (59%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 IH+ + G + V NSL+ MY+KCGKL A + F+ + KD TWNS+I GYC+ G Sbjct: 367 IHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGY 426 Query: 189 NEEALRLFDRMRAEGVEPGVITWN 260 +A LF +M+ +P ITWN Sbjct: 427 CGKAHMLFMKMQKSETQPNAITWN 450 Score = 67.0 bits (162), Expect = 2e-09 Identities = 33/85 (38%), Positives = 52/85 (61%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 IH VI L+S + + NSL+ YAK G + +R F+ KD +TWNS+I+GY G Sbjct: 539 IHGCVIRRNLDSLLPITNSLIDTYAKSGNIGYSRTIFDRALFKDFITWNSLIAGYVLFGC 598 Query: 189 NEEALRLFDRMRAEGVEPGVITWNI 263 ++ AL L D+M+ G++P T+++ Sbjct: 599 SDAALGLVDQMKKLGIKPNRSTFSL 623 >ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g19720; AltName: Full=Protein DYW7 gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 894 Score = 103 bits (256), Expect = 2e-20 Identities = 43/88 (48%), Positives = 63/88 (71%) Frame = +3 Query: 3 EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182 +VIHS VI G++S + V NS++A+YAKCG+L A +FF + +D + WNS++ YC+ Sbjct: 201 KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQN 260 Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266 GK+EEA+ L M EG+ PG++TWNIL Sbjct: 261 GKHEEAVELVKEMEKEGISPGLVTWNIL 288 Score = 87.8 bits (216), Expect = 8e-16 Identities = 39/86 (45%), Positives = 54/86 (62%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 +HS + G + V NSLV MY+KCGKL AR+ F+ + KD TWNS+I+GYC+ G Sbjct: 374 VHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGY 433 Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266 +A LF RM+ + P +ITWN + Sbjct: 434 CGKAYELFTRMQDANLRPNIITWNTM 459 Score = 67.4 bits (163), Expect = 1e-09 Identities = 32/78 (41%), Positives = 47/78 (60%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 IH V+ L++ VKN+L YAK G + +R F ++TKD +TWNS+I GY G Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGS 605 Query: 189 NEEALRLFDRMRAEGVEP 242 AL LF++M+ +G+ P Sbjct: 606 YGPALALFNQMKTQGITP 623 >dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana] Length = 328 Score = 103 bits (256), Expect = 2e-20 Identities = 43/88 (48%), Positives = 63/88 (71%) Frame = +3 Query: 3 EVIHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRR 182 +VIHS VI G++S + V NS++A+YAKCG+L A +FF + +D + WNS++ YC+ Sbjct: 30 KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQN 89 Query: 183 GKNEEALRLFDRMRAEGVEPGVITWNIL 266 GK+EEA+ L M EG+ PG++TWNIL Sbjct: 90 GKHEEAVELVKEMEKEGISPGLVTWNIL 117 Score = 87.8 bits (216), Expect = 8e-16 Identities = 39/86 (45%), Positives = 54/86 (62%) Frame = +3 Query: 9 IHSFVILSGLNSSIHVKNSLVAMYAKCGKLSAARRFFEELDTKDTVTWNSIISGYCRRGK 188 +HS + G + V NSLV MY+KCGKL AR+ F+ + KD TWNS+I+GYC+ G Sbjct: 203 VHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGY 262 Query: 189 NEEALRLFDRMRAEGVEPGVITWNIL 266 +A LF RM+ + P +ITWN + Sbjct: 263 CGKAYELFTRMQDANLRPNIITWNTM 288