BLASTX nr result

ID: Coptis24_contig00039066 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039066
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315678.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
ref|XP_002266484.2| PREDICTED: uncharacterized protein LOC100246...    60   3e-08
ref|XP_002312681.1| predicted protein [Populus trichocarpa] gi|2...    62   6e-08
emb|CBI28587.3| unnamed protein product [Vitis vinifera]               57   2e-06
gb|ABK96386.1| unknown [Populus trichocarpa x Populus deltoides]       55   8e-06

>ref|XP_002315678.1| predicted protein [Populus trichocarpa] gi|222864718|gb|EEF01849.1|
           predicted protein [Populus trichocarpa]
          Length = 466

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
 Frame = -2

Query: 264 QTKTTLMHQNHKKLTRHKNSSSMASTYC--KILPIIPIYFVCFLLFISSAISPVFARSIT 91
           QT TT      K+ TR  N S+MAS++C  K+ PII + F+CFLL  SS I PVF+ S T
Sbjct: 30  QTNTTTTADLAKE-TRQGNFSNMASSWCYKKMSPIISV-FLCFLLVASSNICPVFS-SET 86

Query: 90  SETKANNQTFQPRDELQ-LKRVRAHLRKINK 1
               A NQTF+P++ELQ LK +R  L KINK
Sbjct: 87  RSGHATNQTFRPQEELQKLKIIRERLDKINK 117


>ref|XP_002266484.2| PREDICTED: uncharacterized protein LOC100246465, partial [Vitis
           vinifera]
          Length = 344

 Score = 60.1 bits (144), Expect(2) = 3e-08
 Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
 Frame = -2

Query: 207 SSSMASTYCKILPIIPIYFVCFLLFISSAISPVFARSITSET-KANNQTFQPRDELQ-LK 34
           SS+MAS+YCKI PIIPI FV FLL  SS  S       +SET +  NQTF+P +EL+ LK
Sbjct: 51  SSNMASSYCKISPIIPI-FVSFLLVASSVCS-----VHSSETDRPANQTFRPGEELEKLK 104

Query: 33  RVRAHLRKINK 1
            +R HL KINK
Sbjct: 105 IIRDHLLKINK 115



 Score = 22.7 bits (47), Expect(2) = 3e-08
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 266 HRRRQH*CTK 237
           HRRRQH CT+
Sbjct: 28  HRRRQHQCTQ 37


>ref|XP_002312681.1| predicted protein [Populus trichocarpa] gi|222852501|gb|EEE90048.1|
           predicted protein [Populus trichocarpa]
          Length = 416

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
 Frame = -2

Query: 198 MASTYC--KILPIIPIYFVCFLLFISSAISPVFARSITSETKANNQTFQPRDELQ-LKRV 28
           MAS++C  KI  +I + FVCFLL +SS I PV + S T    A NQTF+P++ELQ LK +
Sbjct: 1   MASSWCNKKISSVISV-FVCFLLVVSSKICPV-SSSETGSRHATNQTFRPQEELQKLKYI 58

Query: 27  RAHLRKINK 1
           R HL KINK
Sbjct: 59  RKHLEKINK 67


>emb|CBI28587.3| unnamed protein product [Vitis vinifera]
          Length = 329

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
 Frame = -2

Query: 198 MASTYCKILPIIPIYFVCFLLFISSAISPVFARSITSET-KANNQTFQPRDELQ-LKRVR 25
           MAS+YCKI PIIPI FV FLL  SS  S       +SET +  NQTF+P +EL+ LK +R
Sbjct: 1   MASSYCKISPIIPI-FVSFLLVASSVCS-----VHSSETDRPANQTFRPGEELEKLKIIR 54

Query: 24  AHLRKINK 1
            HL KINK
Sbjct: 55  DHLLKINK 62


>gb|ABK96386.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 478

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
 Frame = -2

Query: 255 TTLMHQNHKKLTRHKNSSSMA-STYCKILPIIPIYFVCFLLFISSAISPVFAR-SITSET 82
           TT+  Q      RH++S  MA ST     P+IPI FV FLL  +S++SPV +  ++ S++
Sbjct: 40  TTIQRQQ-----RHRHSKKMAASTSLSTHPMIPI-FVAFLLVFASSVSPVLSSPALVSDS 93

Query: 81  KAN---NQTFQPRDE-LQLKRVRAHLRKINK 1
            +    NQTF+P  E L+L+R  A+L+KINK
Sbjct: 94  GSRLLANQTFRPSKEVLRLRRANAYLKKINK 124


Top