BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039047
         (261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002513633.1| pentatricopeptide repeat-containing protein,...   103   1e-20
ref|NP_200097.1| pentatricopeptide repeat-containing protein [Ar...    98   8e-19
ref|XP_002865930.1| pentatricopeptide repeat-containing protein ...    93   2e-17
ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ...    93   3e-17

>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
           gi|302143764|emb|CBI22625.3| unnamed protein product
           [Vitis vinifera]
          Length = 880

 Score =  117 bits (292), Expect = 1e-24
 Identities = 55/71 (77%), Positives = 61/71 (85%)
 Frame = +2

Query: 47  MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIAG 226
           ME GKQLHCYSVKSGL SWISVSNGLVDLYGKCG +HDA R F+EI +P+ VSWNGLI G
Sbjct: 536 METGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFG 595

Query: 227 LSSNSYFSSAL 259
           L+SN + SSAL
Sbjct: 596 LASNGHVSSAL 606



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +2

Query: 47  MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSM-HDARRVFMEIDKPNVVSWNGLIA 223
           ++ GKQ+H   V +GL + +SV N LVD+Y KC +M  DA R F  I  PNV+SW  LIA
Sbjct: 333 LDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIA 392

Query: 224 GLSSN 238
           G S +
Sbjct: 393 GFSEH 397


>ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547541|gb|EEF49036.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 777

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/71 (67%), Positives = 60/71 (84%)
 Frame = +2

Query: 47  MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIAG 226
           +E GKQLHCYS+KSGL   +SV+NGL+DLYGK G +H+ARR F EI +P+VVSWNGLI+G
Sbjct: 540 IETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYGLVHEARRAFTEITEPDVVSWNGLISG 599

Query: 227 LSSNSYFSSAL 259
           L+SN + SSAL
Sbjct: 600 LASNGHISSAL 610



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 47  MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS-MHDARRVFMEIDKPNVVSWNGLIA 223
           ++ G+Q+H   +++GL   + V N LVD+Y KC   +    R+F  I  PNV+SW  LIA
Sbjct: 337 LDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIA 396

Query: 224 GLSSNSYFSSAL 259
           G + + +   +L
Sbjct: 397 GFAEHGFQQDSL 408


>ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic; Flags: Precursor
           gi|10177099|dbj|BAB10433.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332008885|gb|AED96268.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 893

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 45/71 (63%), Positives = 55/71 (77%)
 Frame = +2

Query: 47  MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIAG 226
           +E GK LHCYSVKSG     SV N LVD+Y KCGS+ DA++VF EI  P+VVSWNGL++G
Sbjct: 544 LETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSG 603

Query: 227 LSSNSYFSSAL 259
           L+SN + SSAL
Sbjct: 604 LASNGFISSAL 614


>ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311765|gb|EFH42189.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 878

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 44/70 (62%), Positives = 53/70 (75%)
 Frame = +2

Query: 50  EPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIAGL 229
           E GK LHCYSVKSG    +SV N LVD+Y KCGS+ DA++VF EI  P+VVSWNGL++GL
Sbjct: 544 ETGKHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAMPDVVSWNGLVSGL 603

Query: 230 SSNSYFSSAL 259
           +S    SSAL
Sbjct: 604 ASIGRISSAL 613


>ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355481230|gb|AES62433.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 912

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 45/71 (63%), Positives = 50/71 (70%)
 Frame = +2

Query: 47  MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIAG 226
           ME GKQLHCYSVKSG     SVSN LV LY KCGS+HDA R F +I +P+  SWNGLI+G
Sbjct: 537 METGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISG 596

Query: 227 LSSNSYFSSAL 259
            S N   S AL
Sbjct: 597 FSWNGLISHAL 607