BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038964
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    74   1e-11
gb|AAX94970.1| retrotransposon protein, putative, unclassified [...    72   4e-11
gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japo...    72   4e-11
gb|EAY96391.1| hypothetical protein OsI_18290 [Oryza sativa Indi...    72   4e-11
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    72   4e-11

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 32/97 (32%), Positives = 57/97 (58%)
 Frame = -2

Query: 293  WESVCKPVDEGGIGIKRFKHMNLAMLMKLGWGILTDVSNDFGRFMRAKYFNADGEIIDYY 114
            W+ +C+P  EGG+ IK  + +N A ++KL W +L+  SN     +  + F + G+ I Y+
Sbjct: 778  WKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLS--SNSQWAVLLKRRFFSQGQPIRYF 835

Query: 113  KPSSIWSGISKGIEEVVTRSQWIVGSGEKVDIWRCNW 3
              SS+W G+   +  +     WIVG+G+++++W  NW
Sbjct: 836  VKSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNW 872


>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|77550533|gb|ABA93330.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 816

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
 Frame = -2

Query: 293 WESVCKPVDEGGIGIKRFKHMNLAMLMKLGWGILTDVSNDFGRFMRAKYFNADGEIIDYY 114
           W+ + KP  +GGIG K  K  N A+L +  W ++  + +   + M+A+YF  +G +ID  
Sbjct: 111 WQQLIKPKSKGGIGFKDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYF-PNGHLIDTV 169

Query: 113 KP---SSIWSGISKGIEEVVTRSQWIVGSGEKVDIWRCNW 3
            P   S +W GI  G+E +     W +G G+++ IWR NW
Sbjct: 170 FPTDSSEVWRGICHGLELLKKGIIWRIGKGDQLHIWRDNW 209


>gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japonica Group]
          Length = 653

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
 Frame = -2

Query: 293 WESVCKPVDEGGIGIKRFKHMNLAMLMKLGWGILTDVSNDFGRFMRAKYFNADGEIIDYY 114
           W+ + KP  +GGIG K  K  N A+L +  W ++  + +   + M+A+YF  +G +ID  
Sbjct: 111 WQQLIKPKSKGGIGFKDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYF-PNGHLIDTV 169

Query: 113 KP---SSIWSGISKGIEEVVTRSQWIVGSGEKVDIWRCNW 3
            P   S +W GI  G+E +     W +G G+++ IWR NW
Sbjct: 170 FPTDSSEVWRGICHGLELLKKGIIWRIGKGDQLHIWRDNW 209


>gb|EAY96391.1| hypothetical protein OsI_18290 [Oryza sativa Indica Group]
          Length = 653

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
 Frame = -2

Query: 293 WESVCKPVDEGGIGIKRFKHMNLAMLMKLGWGILTDVSNDFGRFMRAKYFNADGEIIDYY 114
           W+ + KP  +GGIG K  K  N A+L +  W ++  + +   + M+A+YF  +G +ID  
Sbjct: 111 WQQLIKPKSKGGIGFKDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYF-PNGHLIDTV 169

Query: 113 KP---SSIWSGISKGIEEVVTRSQWIVGSGEKVDIWRCNW 3
            P   S +W GI  G+E +     W +G G+++ IWR NW
Sbjct: 170 FPTDSSEVWRGICHGLELLKKGIIWRIGKGDQLHIWRDNW 209


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
 Frame = -2

Query: 293 WESVCKPVDEGGIGIKRFKHMNLAMLMKLGWGILTDVSNDFGRFMRAKYFNADGEIIDYY 114
           W+ VCKP  EGG+GI++ + MN A+L K+GW ++ D  + + R MR  Y   D     + 
Sbjct: 366 WKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWT 425

Query: 113 KP----SSIWSGISKGIEEVVTRS-QWIVGSGEKVDIWRCNW 3
           K     SS W  ++ G+ EVV     W++G G ++  W   W
Sbjct: 426 KVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKW 467