BLASTX nr result
ID: Coptis24_contig00038937
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00038937 (276 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11 emb|CBI18084.3| unnamed protein product [Vitis vinifera] 73 3e-11 emb|CBI30660.3| unnamed protein product [Vitis vinifera] 70 2e-10 ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containi... 70 2e-10 ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat... 69 4e-10 >ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Glycine max] Length = 887 Score = 73.6 bits (179), Expect = 2e-11 Identities = 33/65 (50%), Positives = 48/65 (73%) Frame = -3 Query: 199 MLKMYSKLGRVDQARKLFDEIPEKDLATWNSMIVGYSQNQRPAEAIELFQHMQSECKCKI 20 ++ MY K+G +D ARK+FD++P KD+A+WN+MI G SQ+ P EA+E+FQ MQ E Sbjct: 168 LVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQME----E 223 Query: 19 GIKPD 5 G++PD Sbjct: 224 GVEPD 228 >emb|CBI18084.3| unnamed protein product [Vitis vinifera] Length = 496 Score = 72.8 bits (177), Expect = 3e-11 Identities = 34/66 (51%), Positives = 48/66 (72%) Frame = -3 Query: 199 MLKMYSKLGRVDQARKLFDEIPEKDLATWNSMIVGYSQNQRPAEAIELFQHMQSECKCKI 20 ++ MY+K G +++AR +FD +PEKD+ +W +MI GY+ N P EAI+LF MQ E K+ Sbjct: 162 LVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRE--NKL 219 Query: 19 GIKPDG 2 GIKPDG Sbjct: 220 GIKPDG 225 >emb|CBI30660.3| unnamed protein product [Vitis vinifera] Length = 598 Score = 69.7 bits (169), Expect = 2e-10 Identities = 30/59 (50%), Positives = 42/59 (71%) Frame = -3 Query: 199 MLKMYSKLGRVDQARKLFDEIPEKDLATWNSMIVGYSQNQRPAEAIELFQHMQSECKCK 23 ++ MYSK GR++ AR++FD +PEK++ +W SMI GY +N EA+ELF MQ EC K Sbjct: 323 LIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVK 381 >ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Vitis vinifera] Length = 533 Score = 69.7 bits (169), Expect = 2e-10 Identities = 30/59 (50%), Positives = 42/59 (71%) Frame = -3 Query: 199 MLKMYSKLGRVDQARKLFDEIPEKDLATWNSMIVGYSQNQRPAEAIELFQHMQSECKCK 23 ++ MYSK GR++ AR++FD +PEK++ +W SMI GY +N EA+ELF MQ EC K Sbjct: 323 LIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVK 381 >ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial-like [Vitis vinifera] Length = 685 Score = 68.9 bits (167), Expect = 4e-10 Identities = 32/65 (49%), Positives = 45/65 (69%) Frame = -3 Query: 199 MLKMYSKLGRVDQARKLFDEIPEKDLATWNSMIVGYSQNQRPAEAIELFQHMQSECKCKI 20 M+ +YS GR+D AR++FD +P K L +WNSMIVG+SQN P EA++LF M K+ Sbjct: 377 MITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMN-----KL 431 Query: 19 GIKPD 5 G++ D Sbjct: 432 GLRMD 436