BLASTX nr result
ID: Coptis24_contig00038875
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00038875
(532 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308772.1| predicted protein [Populus trichocarpa] gi|2... 252 2e-65
ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi... 251 5e-65
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] 248 3e-64
ref|XP_002883344.1| pentatricopeptide repeat-containing protein ... 242 2e-62
ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar... 241 6e-62
>ref|XP_002308772.1| predicted protein [Populus trichocarpa] gi|222854748|gb|EEE92295.1|
predicted protein [Populus trichocarpa]
Length = 320
Score = 252 bits (644), Expect = 2e-65
Identities = 116/177 (65%), Positives = 146/177 (82%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
L+DMYSK SI YAE V +P+KN+VTYTT+IL YGQHG+G+RALS+F +M + G+ PD
Sbjct: 71 LVDMYSKSGSINYAESVFTKLPDKNSVTYTTMILAYGQHGMGERALSLFHSMKKSGIEPD 130
Query: 181 AITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYEFV 360
AITF+A+LSACS+SGLVD+GL+IFESME + I P+T HYCCV DMLGR GRVVEAYEFV
Sbjct: 131 AITFIAVLSACSHSGLVDEGLQIFESMEKDFKIQPSTPHYCCVTDMLGRVGRVVEAYEFV 190
Query: 361 KALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFEVEEDNDVTGYHVLLSNIYA 531
K LG+ G+ IWGSLLGACR+H +ELG +++ +L E+E+ ++TGYHVLLSNIYA
Sbjct: 191 KQLGEAGNVLEIWGSLLGACRLHEHVELGEVVAKKLLEMEKTGNITGYHVLLSNIYA 247
>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Vitis vinifera]
Length = 825
Score = 251 bits (641), Expect = 5e-65
Identities = 117/177 (66%), Positives = 145/177 (81%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
L+DMYSK +I YAE V EKN+VTYTT+I YGQHG+G+RALS+F M G+ PD
Sbjct: 566 LLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPD 625
Query: 181 AITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYEFV 360
++TFVAILSACSY+GLVD+GL+IF+SME Y I P+ EHYCCV DMLGR GRVVEAYEFV
Sbjct: 626 SVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFV 685
Query: 361 KALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFEVEEDNDVTGYHVLLSNIYA 531
K LG+ G+ GIWGSLLGACR+HGE ELG++++++L E+E+ + +TGYHVLLSNIYA
Sbjct: 686 KGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYA 742
Score = 61.2 bits (147), Expect = 9e-08
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
+I MYS+C SI + KV ++ E++ VT+ T++ + Q+GL D L + M + G D
Sbjct: 363 IIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVD 422
Query: 181 AITFVAILSACS-----------YSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGR 327
++T A+LS S ++ L+ G++ FE M+ SY ++DM +
Sbjct: 423 SVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMD-SY-----------LIDMYAK 469
Query: 328 AGRVVEAYEFVKALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFE 474
+G + A + + D W +++ +G E G + ++ E
Sbjct: 470 SGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518
Score = 55.8 bits (133), Expect = 4e-06
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCD--SIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMN 174
LIDMY+K I A+++ + S +++ T+ +I GY Q+GL + ++F+ M E +
Sbjct: 463 LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVR 522
Query: 175 PDAITFVAILSACSYSGLVDKGLKI 249
P+A+T +IL AC+ G + G +I
Sbjct: 523 PNAVTLASILPACNPMGTIGLGKQI 547
>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 248 bits (634), Expect = 3e-64
Identities = 116/177 (65%), Positives = 145/177 (81%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
L+DMYSK +I YAE V EKN+VTYTT+IL YGQHG+G+RALS+F M G+ PD
Sbjct: 566 LLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPD 625
Query: 181 AITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYEFV 360
++TFVAILSACSY+GLVD+GL+IF+SME Y I P++EHYCCV DMLGR GRV EAYEFV
Sbjct: 626 SVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFV 685
Query: 361 KALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFEVEEDNDVTGYHVLLSNIYA 531
K LG+ G+ IWGSLLGACR+HGE ELG++++++L E+E+ + +TGYHVLLSNIYA
Sbjct: 686 KGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYA 742
Score = 57.0 bits (136), Expect = 2e-06
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
+I MYS+C SI + KV ++ E++ VT+ T++ + Q+GL D L + M + G D
Sbjct: 363 IIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVD 422
Query: 181 AITFVAILSACS-----------YSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGR 327
++T A+LS S ++ L+ G++ FE M+ G L +DM +
Sbjct: 423 SVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMD---GYL---------IDMYAK 469
Query: 328 AGRVVEAYEFVKALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFE 474
+G + A + + W +++ +G E G + ++ E
Sbjct: 470 SGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCD--SIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMN 174
LIDMY+K I A+++ + S +++ T+ +I GY Q+GL + ++F+ M E +
Sbjct: 463 LIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVR 522
Query: 175 PDAITFVAILSACSYSGLVDKGLKI 249
P+A+T +IL AC+ G + G +I
Sbjct: 523 PNAVTLASILPACNPMGTIGLGKQI 547
>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297329184|gb|EFH59603.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 824
Score = 242 bits (618), Expect = 2e-62
Identities = 110/177 (62%), Positives = 143/177 (80%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
L+DMYSK +I+YAE + E+N+VTYTT+ILGYGQHG+G+RA+S+F +M E G+ PD
Sbjct: 566 LVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPD 625
Query: 181 AITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYEFV 360
AI FVA+LSACSYSGLVD+GLKIFE M Y I P++EHYCC+ DMLGR GRV EAYEFV
Sbjct: 626 AIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFV 685
Query: 361 KALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFEVEEDNDVTGYHVLLSNIYA 531
K LG+ G+ A +WGSLLG+CR+HGE+EL +S+RL ++++ + +GY VLLSN+YA
Sbjct: 686 KGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYA 742
Score = 60.1 bits (144), Expect = 2e-07
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDS--IPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMN 174
LIDMY+K IR ++K+ + E++ T+ ++I GY Q+G + +F+ M E +
Sbjct: 463 LIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIR 522
Query: 175 PDAITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYE 354
P+A+T +IL ACS G VD G K + +VDM +AG + A
Sbjct: 523 PNAVTVASILPACSQVGSVDLG-KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEN 581
Query: 355 FVKALGDRGS 384
+R S
Sbjct: 582 MFSQTKERNS 591
>ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g22150, chloroplastic; Flags: Precursor
gi|11994734|dbj|BAB03063.1| selenium-binding protein-like
[Arabidopsis thaliana] gi|110739449|dbj|BAF01634.1|
hypothetical protein [Arabidopsis thaliana]
gi|332643073|gb|AEE76594.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 820
Score = 241 bits (614), Expect = 6e-62
Identities = 109/177 (61%), Positives = 143/177 (80%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
L+DMYSK +I+YAE + E+N+VTYTT+ILGYGQHG+G+RA+S+F +M E G+ PD
Sbjct: 562 LVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPD 621
Query: 181 AITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYEFV 360
AITFVA+LSACSYSGL+D+GLKIFE M Y I P++EHYCC+ DMLGR GRV EAYEFV
Sbjct: 622 AITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFV 681
Query: 361 KALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFEVEEDNDVTGYHVLLSNIYA 531
K LG+ G+ A +WGSLLG+C++HGE+EL +S+RL + ++ + +GY VLLSN+YA
Sbjct: 682 KGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYA 738
Score = 62.8 bits (151), Expect = 3e-08
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDS--IPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMN 174
LIDMYSK IR ++K+ + E++ T+ ++I GY Q+G ++ +F+ M E +
Sbjct: 459 LIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIR 518
Query: 175 PDAITFVAILSACSYSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGRAGRVVEAYE 354
P+A+T +IL ACS G VD G K + +VDM +AG + A +
Sbjct: 519 PNAVTVASILPACSQIGSVDLG-KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAED 577
Query: 355 FVKALGDRGS 384
+R S
Sbjct: 578 MFSQTKERNS 587
Score = 55.8 bits (133), Expect = 4e-06
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Frame = +1
Query: 1 LIDMYSKCASIRYAEKVCDSIPEKNTVTYTTIILGYGQHGLGDRALSMFQTMSEFGMNPD 180
L+ MYS+C S+ + V S+ E++ V++ T+I + Q+GL D L + M + G D
Sbjct: 359 LMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKID 418
Query: 181 AITFVAILSACS-----------YSGLVDKGLKIFESMECSYGILPTTEHYCCVVDMLGR 327
IT A+LSA S ++ L+ +G++ FE M SY ++DM +
Sbjct: 419 YITVTALLSAASNLRNKEIGKQTHAFLIRQGIQ-FEGMN-SY-----------LIDMYSK 465
Query: 328 AGRVVEAYEFVKALGDRGSAAGIWGSLLGACRMHGEMELGRIISDRLFE 474
+G + + + + G W S++ +G E ++ ++ E
Sbjct: 466 SGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLE 514