BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038840
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15551.3| unnamed protein product [Vitis vinifera]              137   9e-31
ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containi...   137   9e-31
ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containi...   134   8e-30
ref|NP_192184.1| pentatricopeptide repeat-containing protein [Ar...   128   5e-28
ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containi...   127   7e-28

>emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  137 bits (345), Expect = 9e-31
 Identities = 65/89 (73%), Positives = 78/89 (87%)
 Frame = -3

Query: 272 YAQSGDINCARDLFNEMPKRDSISWSAIISGYAQIGHSEEALRLFIELKRDGERMNRSTF 93
           YAQ+GDI  AR+ F+ MP+RDSISW+AII+GYAQ G+ EEAL LF+E+KRDGER+NRSTF
Sbjct: 257 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 316

Query: 92  TCALSTCADMAALEFGKQVHGRLVKAGYE 6
           T  LSTCA++AALE GKQVHGR+VKAG E
Sbjct: 317 TSTLSTCAEIAALELGKQVHGRVVKAGLE 345


>ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  137 bits (345), Expect = 9e-31
 Identities = 65/89 (73%), Positives = 78/89 (87%)
 Frame = -3

Query: 272 YAQSGDINCARDLFNEMPKRDSISWSAIISGYAQIGHSEEALRLFIELKRDGERMNRSTF 93
           YAQ+GDI  AR+ F+ MP+RDSISW+AII+GYAQ G+ EEAL LF+E+KRDGER+NRSTF
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 397

Query: 92  TCALSTCADMAALEFGKQVHGRLVKAGYE 6
           T  LSTCA++AALE GKQVHGR+VKAG E
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRVVKAGLE 426


>ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  134 bits (337), Expect = 8e-30
 Identities = 63/89 (70%), Positives = 76/89 (85%)
 Frame = -3

Query: 272 YAQSGDINCARDLFNEMPKRDSISWSAIISGYAQIGHSEEALRLFIELKRDGERMNRSTF 93
           Y Q+G I  AR LF+ MP+RD +SW+AIISGYAQ GH EEAL +F+E+KRDGE  NRSTF
Sbjct: 335 YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTF 394

Query: 92  TCALSTCADMAALEFGKQVHGRLVKAGYE 6
           +CALSTCAD+AALE GKQVHG++VKAG+E
Sbjct: 395 SCALSTCADIAALELGKQVHGQVVKAGFE 423


>ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g02750 gi|4263522|gb|AAD15348.1| hypothetical protein
           [Arabidopsis thaliana] gi|7269760|emb|CAB77760.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332656824|gb|AEE82224.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  128 bits (321), Expect = 5e-28
 Identities = 58/89 (65%), Positives = 78/89 (87%)
 Frame = -3

Query: 272 YAQSGDINCARDLFNEMPKRDSISWSAIISGYAQIGHSEEALRLFIELKRDGERMNRSTF 93
           YAQ G I+ A++LF++MPKRD +SW+A+I+GY+Q GHS EALRLF++++R+G R+NRS+F
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412

Query: 92  TCALSTCADMAALEFGKQVHGRLVKAGYE 6
           + ALSTCAD+ ALE GKQ+HGRLVK GYE
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVKGGYE 441



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/78 (38%), Positives = 47/78 (60%)
 Frame = -3

Query: 272 YAQSGDINCARDLFNEMPKRDSISWSAIISGYAQIGHSEEALRLFIELKRDGERMNRSTF 93
           Y + G I  A DLF EM  +D +SW+ +I+GY++ G  E ALR F  +KR+G + + +T 
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513

Query: 92  TCALSTCADMAALEFGKQ 39
              LS C+    ++ G+Q
Sbjct: 514 VAVLSACSHTGLVDKGRQ 531


>ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  127 bits (320), Expect = 7e-28
 Identities = 58/89 (65%), Positives = 75/89 (84%)
 Frame = -3

Query: 272 YAQSGDINCARDLFNEMPKRDSISWSAIISGYAQIGHSEEALRLFIELKRDGERMNRSTF 93
           Y Q+GD+  AR+LF+ MP+RDS+SW+AII+GYAQ G  EEA+ + +E+KRDGE +NRSTF
Sbjct: 322 YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 92  TCALSTCADMAALEFGKQVHGRLVKAGYE 6
            CALS CAD+AALE GKQVHG++V+ GYE
Sbjct: 382 CCALSACADIAALELGKQVHGQVVRTGYE 410