BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038835
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...    91   1e-16
ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...    89   5e-16
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...    83   2e-14
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...    82   3e-14
ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containi...    79   3e-13

>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498545|gb|AES79748.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 653

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/93 (45%), Positives = 65/93 (69%)
 Frame = -3

Query: 361 KEVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICG 182
           K V+ +MRLKG++ NLH+Y I+++GL+ +GE+GEAC   E+ML + F P S T D ++  
Sbjct: 380 KRVMKEMRLKGVELNLHTYRIMLDGLVGKGEIGEACVLLEEMLEKCFYPRSSTFDSIVHQ 439

Query: 181 LCKLGLNSEALRILKQMVEMNIMPGVSAWEALL 83
           +C+ GL S+AL ++ ++V  +  PG   WEALL
Sbjct: 440 MCQKGLISDALVLMNKIVAKSFDPGAKVWEALL 472



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/92 (30%), Positives = 54/92 (58%)
 Frame = -3

Query: 358 EVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGL 179
           E+L +++  G++ ++  Y+I+++G++ EG+  +  E ++++L  G VP   T +  I GL
Sbjct: 276 EILNQLKEDGIKPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDVYTYNVYINGL 335

Query: 178 CKLGLNSEALRILKQMVEMNIMPGVSAWEALL 83
           CK     EAL+I+  M ++   P V  +  LL
Sbjct: 336 CKQNNFDEALKIVVSMEKLGCKPNVVTYNTLL 367


>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/113 (40%), Positives = 71/113 (62%)
 Frame = -3

Query: 358 EVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGL 179
           E++ +M LKG+  N+ +Y I+I+GL   G++ EAC  +E+ L +G    SL  DE+ICGL
Sbjct: 382 ELVREMGLKGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKGLCTQSLMFDEIICGL 441

Query: 178 CKLGLNSEALRILKQMVEMNIMPGVSAWEALLSIHQLHLNDTVSLDLEDCINS 20
           C   L+ +AL++L++MV  N+ PG  AW+ALL      L D+V   L   ++S
Sbjct: 442 CHRDLSCKALKLLEKMVGKNVSPGARAWKALLLSSGFKL-DSVETKLFSLVDS 493


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Vitis vinifera]
          Length = 505

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/93 (43%), Positives = 62/93 (66%)
 Frame = -3

Query: 361 KEVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICG 182
           +E+  +M L+G+Q N  +Y I+++GL+ +GE+ E+C   E+ML + F     T DE+IC 
Sbjct: 381 RELAREMELEGVQWNWETYRIMLDGLVGKGEIDESCSLLEEMLDKYFSCWCSTFDEIICE 440

Query: 181 LCKLGLNSEALRILKQMVEMNIMPGVSAWEALL 83
           LC+ GL  +AL+++ +MV   I PG  AWEALL
Sbjct: 441 LCQRGLVCKALQLVNKMVRKTIAPGARAWEALL 473


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Glycine max]
          Length = 499

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 38/93 (40%), Positives = 63/93 (67%)
 Frame = -3

Query: 361 KEVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICG 182
           +E++ +M  KG+  NLH+Y I+++GL+ +GE+GE+C   E+ML +   P S T D +I  
Sbjct: 386 RELMKEMGWKGVGLNLHTYRIVLDGLVGKGEIGESCLLLEEMLEKCLFPRSSTFDNIIFQ 445

Query: 181 LCKLGLNSEALRILKQMVEMNIMPGVSAWEALL 83
           +C+  L +EA+ + K++V  + +PG S WEALL
Sbjct: 446 MCQKDLFTEAMELTKKVVAKSFLPGASTWEALL 478



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/92 (31%), Positives = 55/92 (59%)
 Frame = -3

Query: 358 EVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICGL 179
           ++L + +  G++ ++ SY+++++G++ EGE     E +++ML  G +P + T +  I GL
Sbjct: 282 DILNQQKQDGIKLDVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIPDAYTYNVYINGL 341

Query: 178 CKLGLNSEALRILKQMVEMNIMPGVSAWEALL 83
           CK    +EAL+I+  M E+   P V  +  LL
Sbjct: 342 CKQNNVAEALQIVASMEELGCKPNVVTYNTLL 373


>ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
           gi|449483740|ref|XP_004156675.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
          Length = 491

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 43/107 (40%), Positives = 61/107 (57%)
 Frame = -3

Query: 361 KEVLTKMRLKGLQRNLHSYSILINGLMCEGEVGEACEFWEDMLARGFVPMSLTCDEMICG 182
           +++ +KM+LKGL  NL ++ I+I+GL   GEV EAC   E+ML   F P   T  E++  
Sbjct: 376 RKLRSKMQLKGLAENLRTFRIMIDGLFHNGEVIEACVLLEEMLGSRFPPQISTFSEILSW 435

Query: 181 LCKLGLNSEALRILKQMVEMNIMPGVSAWEALLSIHQLHLNDTVSLD 41
           LCK  +  +A+ +L  MV  N  PG  AWE LL   +  L    SL+
Sbjct: 436 LCKRHMVGKAVELLALMVGKNFSPGPKAWEILLLSSESELTSVKSLE 482