BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038814
         (277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|2...   143   1e-32
ref|XP_002522705.1| pentatricopeptide repeat-containing protein,...   140   8e-32
ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis th...   127   7e-28

>ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|222858326|gb|EEE95873.1|
           predicted protein [Populus trichocarpa]
          Length = 746

 Score =  143 bits (361), Expect = 1e-32
 Identities = 68/92 (73%), Positives = 82/92 (89%)
 Frame = +1

Query: 1   RTIVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSV 180
           RTIVSWTSIISGYAQNGQP+EALRIFSEMRK +++PDWI LVSV++AY+DVEDLE GKS+
Sbjct: 237 RTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSI 296

Query: 181 HSYVIKVGLELECDLLIALTAMYAKSGGILFA 276
           H  VIK+GLE E DLLI+LT++YAK G ++ A
Sbjct: 297 HGCVIKMGLECEFDLLISLTSLYAKCGHVMVA 328


>ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538055|gb|EEF39667.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 501

 Score =  140 bits (354), Expect = 8e-32
 Identities = 67/92 (72%), Positives = 83/92 (90%)
 Frame = +1

Query: 1   RTIVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSV 180
           R+IVSWTSIISGYAQNGQP+EALRIF++MR++++KPD I LVSV++AY+DVEDLE GKS+
Sbjct: 209 RSIVSWTSIISGYAQNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSI 268

Query: 181 HSYVIKVGLELECDLLIALTAMYAKSGGILFA 276
           H  VIK+GLE E DLLI+LTAMYAK G ++FA
Sbjct: 269 HGCVIKMGLEFEIDLLISLTAMYAKCGQVMFA 300



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/87 (32%), Positives = 48/87 (55%)
 Frame = +1

Query: 7   IVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSVHS 186
           ++ W ++ISGYA+NG   EAL +F  M  ++  PD I + SVI A + +  LE  + +  
Sbjct: 312 LILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACAQMGSLELARWMSD 371

Query: 187 YVIKVGLELECDLLIALTAMYAKSGGI 267
           Y+ +     +  +  AL  M++K G +
Sbjct: 372 YIGRSEFRNDAFVSSALIDMFSKCGSV 398


>ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed
           protein product [Vitis vinifera]
          Length = 742

 Score =  135 bits (341), Expect = 3e-30
 Identities = 64/92 (69%), Positives = 79/92 (85%)
 Frame = +1

Query: 1   RTIVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSV 180
           R IVSWTS+ISGY QNG P+EALRIF +MR+ ++KPDWI LVSV++AY+DVEDLEQGKS+
Sbjct: 233 RNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSI 292

Query: 181 HSYVIKVGLELECDLLIALTAMYAKSGGILFA 276
           H  V+K+GLE E DLLI+LTAMYAK G ++ A
Sbjct: 293 HGCVVKMGLEFEPDLLISLTAMYAKCGQVMVA 324



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/88 (34%), Positives = 49/88 (55%)
 Frame = +1

Query: 4   TIVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSVH 183
           ++  W +II GY+ +    +A+ ++S M+   + PD   L  V+KA S V  LE GK VH
Sbjct: 133 SVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVH 192

Query: 184 SYVIKVGLELECDLLIALTAMYAKSGGI 267
             + ++G E +  +   L A+YAK G +
Sbjct: 193 GQIFRLGFESDVFVQNGLVALYAKCGRV 220


>ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  129 bits (325), Expect = 2e-28
 Identities = 63/92 (68%), Positives = 78/92 (84%)
 Frame = +1

Query: 1   RTIVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSV 180
           RTIVSWTSIISGYAQNG+ VEALR+FS+MR   +KPDWI LVS+++AY+DV+DLEQG+S+
Sbjct: 218 RTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSI 277

Query: 181 HSYVIKVGLELECDLLIALTAMYAKSGGILFA 276
           H +VIK+GLE E  LLI+LTA YAK G +  A
Sbjct: 278 HGFVIKMGLEDEPALLISLTAFYAKCGLVTVA 309



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/90 (34%), Positives = 50/90 (55%)
 Frame = +1

Query: 7   IVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSVHS 186
           ++ W ++ISGYA+NG   EA+ +F  M   ++KPD + + S + A + V  LE  + +  
Sbjct: 321 VIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDD 380

Query: 187 YVIKVGLELECDLLIALTAMYAKSGGILFA 276
           YV K     +  +  +L  MYAK G + FA
Sbjct: 381 YVSKSNYGSDIFVNTSLIDMYAKCGSVEFA 410


>ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
           gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g12770 gi|11994419|dbj|BAB02421.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332641723|gb|AEE75244.1| mitochondrial editing factor
           22 [Arabidopsis thaliana]
          Length = 694

 Score =  127 bits (320), Expect = 7e-28
 Identities = 57/92 (61%), Positives = 79/92 (85%)
 Frame = +1

Query: 1   RTIVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSV 180
           RTIVSWT+I+S YAQNG+P+EAL IFS+MRK+D+KPDW+ LVSV+ A++ ++DL+QG+S+
Sbjct: 185 RTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSI 244

Query: 181 HSYVIKVGLELECDLLIALTAMYAKSGGILFA 276
           H+ V+K+GLE+E DLLI+L  MYAK G +  A
Sbjct: 245 HASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 33/87 (37%), Positives = 52/87 (59%)
 Frame = +1

Query: 7   IVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSVHS 186
           ++ W ++ISGYA+NG   EA+ +F EM   D++PD I + S I A + V  LEQ +S++ 
Sbjct: 288 LILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYE 347

Query: 187 YVIKVGLELECDLLIALTAMYAKSGGI 267
           YV +     +  +  AL  M+AK G +
Sbjct: 348 YVGRSDYRDDVFISSALIDMFAKCGSV 374



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/83 (32%), Positives = 47/83 (56%)
 Frame = +1

Query: 7   IVSWTSIISGYAQNGQPVEALRIFSEMRKLDMKPDWIVLVSVIKAYSDVEDLEQGKSVHS 186
           I  W +II GY++N    +AL ++S M+   + PD      ++KA S +  L+ G+ VH+
Sbjct: 84  IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143

Query: 187 YVIKVGLELECDLLIALTAMYAK 255
            V ++G + +  +   L A+YAK
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAK 166