BLASTX nr result
ID: Coptis24_contig00038764
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00038764 (376 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 90 2e-16 gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ... 85 7e-15 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 82 3e-14 emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 74 1e-11 emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 72 6e-11 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 90.1 bits (222), Expect = 2e-16 Identities = 44/125 (35%), Positives = 70/125 (56%) Frame = +1 Query: 1 GGMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXX 180 GG+S Q L ++G G FP YLGV P+ KG+ L P++D Sbjct: 377 GGISDARLQQLINVIGFNKGSFPFNYLGV--PIFKGKPKARFLQPIVDKIKTKLSNWKAS 434 Query: 181 LLTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWE 360 +L+ G+ + SV S+ ++ + +Y W S ++KE + RNF+W+G+ +KLVTV+W+ Sbjct: 435 ILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWK 494 Query: 361 KVCKP 375 K+CKP Sbjct: 495 KLCKP 499 >gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula] Length = 161 Score = 84.7 bits (208), Expect = 7e-15 Identities = 41/125 (32%), Positives = 72/125 (57%) Frame = +1 Query: 1 GGMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXX 180 G +S+ L I+G G P YLGV P+ KG+ L P++D Sbjct: 12 GSISVSKLNQLINIIGFNHGTLPFTYLGV--PIFKGKPKVIHLQPIVDKIIAKLSTWKAS 69 Query: 181 LLTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWE 360 LL+ G+ + SV+ S+ +++ VY W +S++K+ + ++NF+W+G+ + +KLVTV+W+ Sbjct: 70 LLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWK 129 Query: 361 KVCKP 375 K+C+P Sbjct: 130 KLCRP 134 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 82.4 bits (202), Expect = 3e-14 Identities = 41/123 (33%), Positives = 65/123 (52%) Frame = +1 Query: 1 GGMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXX 180 GG++ N+ ILG VG P YLG P+ KG+ P+ D Sbjct: 471 GGITDTRMNNIVNILGFNVGSLPFTYLGA--PIFKGKPKGIHFQPIADKVKAKLAKWKAS 528 Query: 181 LLTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWE 360 LL+ G+ + SV+ S+ V+ M +Y W I+KE + ++NF+W+G+ +K+VTV+W Sbjct: 529 LLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWR 588 Query: 361 KVC 369 K+C Sbjct: 589 KIC 591 >emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1357 Score = 74.3 bits (181), Expect = 1e-11 Identities = 41/124 (33%), Positives = 66/124 (53%) Frame = +1 Query: 4 GMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXXL 183 G+S + ++ L +L ++ +KYLG+ P + GR + + LLD L Sbjct: 733 GVSCEKKEELITLLHMRQVDRHQKYLGI--PALCGRSKKVLFRELLDRMWKKLRGWKEKL 790 Query: 184 LTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWEK 363 L+ GK V + +V+ ++P Y MGVYK ++I+E M F W G +K+ +SWEK Sbjct: 791 LSRAGKEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSWEK 850 Query: 364 VCKP 375 +CKP Sbjct: 851 MCKP 854 >emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1355 Score = 71.6 bits (174), Expect = 6e-11 Identities = 40/122 (32%), Positives = 63/122 (51%) Frame = +1 Query: 4 GMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXXL 183 G+S+ + L IL ++ EKYLG+ P I GR +A+ L+D L Sbjct: 730 GVSVSQKDELTNILNMRQVDRHEKYLGI--PSISGRSKKAIFDSLIDRIWKKLQGWKEKL 787 Query: 184 LTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWEK 363 L+ GK V + SV+ +IP Y MGVYK+ II++ + M F W + +K+ +W+ Sbjct: 788 LSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWWGSSDTQRKIHWKNWDS 847 Query: 364 VC 369 +C Sbjct: 848 MC 849