BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038764
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    90   2e-16
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    85   7e-15
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    82   3e-14
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    74   1e-11
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    72   6e-11

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/125 (35%), Positives = 70/125 (56%)
 Frame = +1

Query: 1   GGMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXX 180
           GG+S    Q L  ++G   G FP  YLGV  P+ KG+     L P++D            
Sbjct: 377 GGISDARLQQLINVIGFNKGSFPFNYLGV--PIFKGKPKARFLQPIVDKIKTKLSNWKAS 434

Query: 181 LLTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWE 360
           +L+  G+   + SV  S+ ++ + +Y W S ++KE +   RNF+W+G+   +KLVTV+W+
Sbjct: 435 ILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWK 494

Query: 361 KVCKP 375
           K+CKP
Sbjct: 495 KLCKP 499


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 41/125 (32%), Positives = 72/125 (57%)
 Frame = +1

Query: 1   GGMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXX 180
           G +S+     L  I+G   G  P  YLGV  P+ KG+     L P++D            
Sbjct: 12  GSISVSKLNQLINIIGFNHGTLPFTYLGV--PIFKGKPKVIHLQPIVDKIIAKLSTWKAS 69

Query: 181 LLTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWE 360
           LL+  G+   + SV+ S+  +++ VY W +S++K+ +  ++NF+W+G+ + +KLVTV+W+
Sbjct: 70  LLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWK 129

Query: 361 KVCKP 375
           K+C+P
Sbjct: 130 KLCRP 134


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 41/123 (33%), Positives = 65/123 (52%)
 Frame = +1

Query: 1   GGMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXX 180
           GG++     N+  ILG  VG  P  YLG   P+ KG+       P+ D            
Sbjct: 471 GGITDTRMNNIVNILGFNVGSLPFTYLGA--PIFKGKPKGIHFQPIADKVKAKLAKWKAS 528

Query: 181 LLTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWE 360
           LL+  G+   + SV+ S+ V+ M +Y W   I+KE +  ++NF+W+G+   +K+VTV+W 
Sbjct: 529 LLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWR 588

Query: 361 KVC 369
           K+C
Sbjct: 589 KIC 591


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 41/124 (33%), Positives = 66/124 (53%)
 Frame = +1

Query: 4    GMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXXL 183
            G+S + ++ L  +L ++     +KYLG+  P + GR  + +   LLD            L
Sbjct: 733  GVSCEKKEELITLLHMRQVDRHQKYLGI--PALCGRSKKVLFRELLDRMWKKLRGWKEKL 790

Query: 184  LTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWEK 363
            L+  GK V + +V+ ++P Y MGVYK   ++I+E    M  F W G    +K+  +SWEK
Sbjct: 791  LSRAGKEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSWEK 850

Query: 364  VCKP 375
            +CKP
Sbjct: 851  MCKP 854


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 40/122 (32%), Positives = 63/122 (51%)
 Frame = +1

Query: 4    GMSMDGRQNLQQILGIQVGVFPEKYLGVQMPLIKGRVTRAVLTPLLDXXXXXXXXXXXXL 183
            G+S+  +  L  IL ++     EKYLG+  P I GR  +A+   L+D            L
Sbjct: 730  GVSVSQKDELTNILNMRQVDRHEKYLGI--PSISGRSKKAIFDSLIDRIWKKLQGWKEKL 787

Query: 184  LTFQGKRVFMNSVLSSIPVYNMGVYKWQSSIIKEAKCIMRNFLWTGNPATKKLVTVSWEK 363
            L+  GK V + SV+ +IP Y MGVYK+   II++ +  M  F W  +   +K+   +W+ 
Sbjct: 788  LSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWWGSSDTQRKIHWKNWDS 847

Query: 364  VC 369
            +C
Sbjct: 848  MC 849