BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038727
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    59   5e-07
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    59   5e-07
gb|AAM08561.1|AC092749_14 Putative retroelement [Oryza sativa Ja...    58   7e-07
ref|NP_001176100.1| Os10g0351414 [Oryza sativa Japonica Group] g...    58   7e-07
gb|AAP53215.2| retrotransposon protein, putative, unclassified, ...    58   7e-07

>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
 Frame = -3

Query: 343 PSSNTAGGLCIMWKGNFYLQVLSSSLNHITTSITFGTQSTLWIACFFYGSPYIPQRNKSW 164
           P +  +GGL +MWK N  L ++S     I + +TF  +S  +++C  YG P   +R++ W
Sbjct: 215 PPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFNNKS-FYLSC-VYGHPTQSERHQLW 272

Query: 163 DPIRSLSIH-NKPILIIGDLNVILSENDKNGG 71
             +  +S + N   L++GD N ILS  +K GG
Sbjct: 273 QTLEHISDNRNAEWLLVGDFNEILSNAEKIGG 304


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
 Frame = -3

Query: 343 PSSNTAGGLCIMWKGNFYLQVLSSSLNHITTSITFGTQSTLWIACFFYGSPYIPQRNKSW 164
           P +  +GGL +MWK N  L ++S     I + +TF  +S  +++C  YG P   +R++ W
Sbjct: 441 PPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFNNKS-FYLSC-VYGHPTQSERHQLW 498

Query: 163 DPIRSLSIH-NKPILIIGDLNVILSENDKNGG 71
             +  +S + N   L++GD N ILS  +K GG
Sbjct: 499 QTLEHISDNRNAEWLLVGDFNEILSNAEKIGG 530


>gb|AAM08561.1|AC092749_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1739

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
 Frame = -3

Query: 346  VPSSNTAGGLCIMWKGNFYLQVLSSSLNHITTSITFGTQSTLWIACFFYGSPYIPQRNKS 167
            VP    +GGL +MW  +  L ++ SS+N+I     +     ++     YG P     +  
Sbjct: 828  VPVDQASGGLWLMWDEDMDLTIVQSSINYILAYGVYKNSGPIFNLLCIYGDPSHRATSAM 887

Query: 166  WDPIRSLSIH--NKPILIIGDLNVILSENDKNGGKQYDIQDSYLAHDIIRNLGVLDL 2
            W  I S  +H  +KP   +GDLN I+  N+K G    +     +    + NLG++D+
Sbjct: 888  WSEISSFVVHSSHKPTFCMGDLNEIMHANEKYGLAPPNQNRINIFKHHVNNLGLMDM 944


>ref|NP_001176100.1| Os10g0351414 [Oryza sativa Japonica Group]
           gi|255679325|dbj|BAH94828.1| Os10g0351414 [Oryza sativa
           Japonica Group]
          Length = 912

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
 Frame = -3

Query: 346 VPSSNTAGGLCIMWKGNFYLQVLSSSLNHITTSITFGTQSTLWIACFFYGSPYIPQRNKS 167
           VP    +GGL +MW  +  L ++ SS+N+I     +     ++     YG P     +  
Sbjct: 52  VPVDQASGGLWLMWDEDMDLTIVQSSINYILAYGVYKNSGPIFNLLCIYGDPSHRATSAM 111

Query: 166 WDPIRSLSIH--NKPILIIGDLNVILSENDKNGGKQYDIQDSYLAHDIIRNLGVLDL 2
           W  I S  +H  +KP   +GDLN I+  N+K G    +     +    + NLG++D+
Sbjct: 112 WSEISSFVVHSSHKPTFCMGDLNEIMHANEKYGLAPPNQNRINIFKHHVNNLGLMDM 168


>gb|AAP53215.2| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1701

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
 Frame = -3

Query: 346  VPSSNTAGGLCIMWKGNFYLQVLSSSLNHITTSITFGTQSTLWIACFFYGSPYIPQRNKS 167
            VP    +GGL +MW  +  L ++ SS+N+I     +     ++     YG P     +  
Sbjct: 828  VPVDQASGGLWLMWDEDMDLTIVQSSINYILAYGVYKNSGPIFNLLCIYGDPSHRATSAM 887

Query: 166  WDPIRSLSIH--NKPILIIGDLNVILSENDKNGGKQYDIQDSYLAHDIIRNLGVLDL 2
            W  I S  +H  +KP   +GDLN I+  N+K G    +     +    + NLG++D+
Sbjct: 888  WSEISSFVVHSSHKPTFCMGDLNEIMHANEKYGLAPPNQNRINIFKHHVNNLGLMDM 944