BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038704
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...   125   5e-27
dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]    125   5e-27
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   124   6e-27
ref|XP_002866196.1| hypothetical protein ARALYDRAFT_495822 [Arab...   122   2e-26

>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  129 bits (324), Expect = 2e-28
 Identities = 64/91 (70%), Positives = 72/91 (79%)
 Frame = +3

Query: 6   RYPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVK 185
           RYPFD+FVCSSVISGFC+IGKPELALGF+ NV   G LR PNVVT TA+V ALCK GRV 
Sbjct: 154 RYPFDDFVCSSVISGFCRIGKPELALGFFKNVTDCGGLR-PNVVTCTALVGALCKMGRVG 212

Query: 186 EVCELVHKMENEGVVLDAVFYSSWICGHFEK 278
           EVC LV  ME EG+ LD V YS+W CG+ E+
Sbjct: 213 EVCGLVQWMEREGLGLDVVLYSAWACGYVEE 243


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  125 bits (313), Expect = 5e-27
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 9   YPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKE 188
           YPFDNFVCS+VISGFCKIGKPELALGF+++   SGVL  PN+VTYT +VSALC+ G+V E
Sbjct: 167 YPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVL-VPNLVTYTTLVSALCQLGKVDE 225

Query: 189 VCELVHKMENEGVVLDAVFYSSWICGHFE 275
           V +LV ++E+EG   D VFYS+WI G+F+
Sbjct: 226 VRDLVRRLEDEGFEFDCVFYSNWIHGYFK 254


>dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]
          Length = 1012

 Score =  125 bits (313), Expect = 5e-27
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 9   YPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKE 188
           YPFDNFVCS+VISGFCKIGKPELALGF+++   SGVL  PN+VTYT +VSALC+ G+V E
Sbjct: 208 YPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVL-VPNLVTYTTLVSALCQLGKVDE 266

Query: 189 VCELVHKMENEGVVLDAVFYSSWICGHFE 275
           V +LV ++E+EG   D VFYS+WI G+F+
Sbjct: 267 VRDLVRRLEDEGFEFDCVFYSNWIHGYFK 295


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  124 bits (312), Expect = 6e-27
 Identities = 57/88 (64%), Positives = 71/88 (80%)
 Frame = +3

Query: 9   YPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKE 188
           YPF NFVCSS++SGFCK+GKPELA+GF++N  K G L+ PN+VTYTA+VS+LC  GR  E
Sbjct: 180 YPFCNFVCSSIVSGFCKMGKPELAMGFFENSLKLGALK-PNLVTYTAVVSSLCMLGRADE 238

Query: 189 VCELVHKMENEGVVLDAVFYSSWICGHF 272
           V +LV +ME EG+  D VFYS WICG+F
Sbjct: 239 VFDLVCEMEEEGLAFDVVFYSCWICGYF 266


>ref|XP_002866196.1| hypothetical protein ARALYDRAFT_495822 [Arabidopsis lyrata subsp.
           lyrata] gi|297312031|gb|EFH42455.1| hypothetical protein
           ARALYDRAFT_495822 [Arabidopsis lyrata subsp. lyrata]
          Length = 821

 Score =  122 bits (307), Expect = 2e-26
 Identities = 59/89 (66%), Positives = 73/89 (82%)
 Frame = +3

Query: 9   YPFDNFVCSSVISGFCKIGKPELALGFYDNVEKSGVLRCPNVVTYTAIVSALCKEGRVKE 188
           YPFDNFV S+VISGFCKIGKPELALGF++    SGVL  PN+VTYTA+VSALC+ G+V E
Sbjct: 18  YPFDNFVSSAVISGFCKIGKPELALGFFETAVDSGVL-VPNLVTYTAVVSALCQLGKVDE 76

Query: 189 VCELVHKMENEGVVLDAVFYSSWICGHFE 275
           V +LV ++E+EG   D VFYS+WI G+F+
Sbjct: 77  VRDLVRRLEDEGFEFDCVFYSNWIHGYFK 105