BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038627
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
ref|XP_003603974.1| Pentatricopeptide repeat-containing protein ...   119   3e-25
gb|AAS79604.1| putative pentatricopeptide repeat-containing prot...   113   1e-23
ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22

>ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera] gi|297744424|emb|CBI37686.3| unnamed
           protein product [Vitis vinifera]
          Length = 571

 Score =  126 bits (317), Expect = 2e-27
 Identities = 65/121 (53%), Positives = 83/121 (68%), Gaps = 15/121 (12%)
 Frame = -1

Query: 396 LMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE---------------IEVKGI 262
           LM    LL+MDS D GSYVL GNVYAS G W +KAK+RE               IEV G+
Sbjct: 388 LMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGL 447

Query: 261 IHKFFAGDTEHRQAENIYKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKL 82
           +H+F AGD+ H +AE IY K DE+ ++L   GY PK+SEV+L+I+++EKAFQL H+SEKL
Sbjct: 448 VHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKL 507

Query: 81  A 79
           A
Sbjct: 508 A 508


>ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355493022|gb|AES74225.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/124 (48%), Positives = 79/124 (63%), Gaps = 15/124 (12%)
 Frame = -1

Query: 396 LMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE---------------IEVKGI 262
           LM   +L  M + DSGSY+L  NVYAS G WC+KA+VRE               IEV G+
Sbjct: 383 LMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGV 442

Query: 261 IHKFFAGDTEHRQAENIYKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKL 82
           +H+F  GD +H   E I+ K D++ D+L   GY PK+SEVML+++DEEKA QL H+SEKL
Sbjct: 443 VHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEKL 502

Query: 81  AYCW 70
           A  +
Sbjct: 503 ALAY 506


>gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida] gi|118562903|dbj|BAF37793.1| hypothetical
           protein [Ipomoea trifida]
          Length = 575

 Score =  113 bits (283), Expect = 1e-23
 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 15/121 (12%)
 Frame = -1

Query: 396 LMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE---------------IEVKGI 262
           L+ + +LL MDS D+GSYVL  NVYA+ G W EKAK RE               IE+ G+
Sbjct: 392 LVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGV 451

Query: 261 IHKFFAGDTEHRQAENIYKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKL 82
           +H+F AGD+ H +A  +Y+K +++ ++L   GY P +SEV+L+I+D+EKA QL H+SEKL
Sbjct: 452 VHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDEKASQLLHHSEKL 511

Query: 81  A 79
           A
Sbjct: 512 A 512


>ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  110 bits (276), Expect = 9e-23
 Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 15/124 (12%)
 Frame = -1

Query: 396 LMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE---------------IEVKGI 262
           LM   ++  M + DSGSY+L  NVYAS G WC KA+VRE               IEV G 
Sbjct: 389 LMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGG 448

Query: 261 IHKFFAGDTEHRQAENIYKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKL 82
           +H+F  GD  H +AE I+ +  E+ D++   GY P++SEV+L+++DEEKA QL H+SEKL
Sbjct: 449 VHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKL 508

Query: 81  AYCW 70
           A  +
Sbjct: 509 ALAY 512


>ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 542

 Score =  110 bits (274), Expect = 2e-22
 Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 15/124 (12%)
 Frame = -1

Query: 396 LMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE---------------IEVKGI 262
           LM   ++  M + DSGSY+L  NVYAS G WC KA+VRE               IE+ G 
Sbjct: 359 LMKHLEIQDMRADDSGSYILTSNVYASTGKWCNKAEVRELMNKKGLVKPLGSSRIEIDGG 418

Query: 261 IHKFFAGDTEHRQAENIYKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKL 82
           +H+F  GD  H +AE I+ +  E+ D++   GY P++SEV+L+++DEEKA QL H+SEKL
Sbjct: 419 VHEFVMGDYNHPEAEEIFVELAEVMDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKL 478

Query: 81  AYCW 70
           A  +
Sbjct: 479 ALAY 482