BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038624
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    60   3e-14
gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japo...    63   7e-14
gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 10003...    64   9e-14
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    59   3e-13
gb|ABA91837.2| retrotransposon protein, putative, unclassified [...    59   3e-13

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 60.1 bits (144), Expect(2) = 3e-14
 Identities = 29/65 (44%), Positives = 40/65 (61%)
 Frame = -2

Query: 195  LNPFLHKFISPLQGAFVKRRSIGDNIGLASEILFNMRXXXXXX*GWMAIKLDMAKAFDRV 16
            L PF+ + IS  Q AFV  R I DN+ +A EI  +++       G   +KLDM KA+DRV
Sbjct: 1134 LQPFMSELISDNQSAFVSNRQIQDNVIIAHEIYHHLKLTRSCNNGAFGLKLDMNKAYDRV 1193

Query: 15   EWSFV 1
            EW+F+
Sbjct: 1194 EWNFL 1198



 Score = 42.7 bits (99), Expect(2) = 3e-14
 Identities = 16/31 (51%), Positives = 27/31 (87%)
 Frame = -1

Query: 271  HITKFRPISICNFSYKIISKIMSTKLKPLPS 179
            H + +RPI++CNFSYKI++KI++++L+P  S
Sbjct: 1109 HPSHYRPIALCNFSYKILTKIIASRLQPFMS 1139


>gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japonica Group]
          Length = 662

 Score = 63.2 bits (152), Expect(2) = 7e-14
 Identities = 34/65 (52%), Positives = 41/65 (63%)
 Frame = -2

Query: 195 LNPFLHKFISPLQGAFVKRRSIGDNIGLASEILFNMRXXXXXX*GWMAIKLDMAKAFDRV 16
           L   L + ISP Q AFV  R I DNI +A E+   MR       G+ AIKLDM+KA+DRV
Sbjct: 219 LKTILPEVISPTQSAFVPGRLISDNILVAYEMTHYMRSKKRGKMGYAAIKLDMSKAYDRV 278

Query: 15  EWSFV 1
           EWSF+
Sbjct: 279 EWSFL 283



 Score = 38.5 bits (88), Expect(2) = 7e-14
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = -1

Query: 274 EHITKFRPISICNFSYKIISKIMSTKLKPL 185
           E+I   RPIS+CN  YKI+SK+++ +LK +
Sbjct: 193 ENIKDLRPISLCNVLYKIVSKVLANRLKTI 222


>gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
          Length = 1557

 Score = 63.9 bits (154), Expect(2) = 9e-14
 Identities = 32/65 (49%), Positives = 42/65 (64%)
 Frame = -2

Query: 195  LNPFLHKFISPLQGAFVKRRSIGDNIGLASEILFNMRXXXXXX*GWMAIKLDMAKAFDRV 16
            L PFL   +SP Q AFV  R I DNI +A E++  +R        ++AIK DM+KAFDRV
Sbjct: 886  LQPFLPDLVSPNQSAFVPDRLISDNILIAHEVVHGLRTHKTVSKEFIAIKSDMSKAFDRV 945

Query: 15   EWSFV 1
            EW++V
Sbjct: 946  EWNYV 950



 Score = 37.4 bits (85), Expect(2) = 9e-14
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = -1

Query: 274 EHITKFRPISICNFSYKIISKIMSTKLKP 188
           + +T  RPIS+C+  YKIISKIM  +L+P
Sbjct: 860 DKMTDLRPISLCSVMYKIISKIMVKRLQP 888


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score = 58.9 bits (141), Expect(2) = 3e-13
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -2

Query: 195  LNPFLHKFISPLQGAFVKRRSIGDNIGLASEILFNMRXXXXXX*GWMAIKLDMAKAFDRV 16
            L P L + ISP+Q AFV +R I DNI LA E+   ++       G+ A+K  M+KA+DRV
Sbjct: 982  LKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRV 1041

Query: 15   EWSFV 1
            EW F+
Sbjct: 1042 EWGFL 1046



 Score = 40.8 bits (94), Expect(2) = 3e-13
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -1

Query: 274  EHITKFRPISICNFSYKIISKIMSTKLKPLPS 179
            E I   RPIS+CN  YKI SK+++ +LKPL S
Sbjct: 956  ERIKDLRPISLCNVVYKIASKVLANRLKPLLS 987


>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1301

 Score = 58.9 bits (141), Expect(2) = 3e-13
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -2

Query: 195  LNPFLHKFISPLQGAFVKRRSIGDNIGLASEILFNMRXXXXXX*GWMAIKLDMAKAFDRV 16
            L P L + ISP+Q AFV +R I DNI LA E+   ++       G+ A+K  M+KA+DRV
Sbjct: 959  LKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRV 1018

Query: 15   EWSFV 1
            EW F+
Sbjct: 1019 EWGFL 1023



 Score = 40.8 bits (94), Expect(2) = 3e-13
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -1

Query: 274  EHITKFRPISICNFSYKIISKIMSTKLKPLPS 179
            E I   RPIS+CN  YKI SK+++ +LKPL S
Sbjct: 933  ERIKDLRPISLCNVVYKIASKVLANRLKPLLS 964