BLASTX nr result

ID: Coptis24_contig00038564 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038564
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20609.3| unnamed protein product [Vitis vinifera]               66   3e-09
ref|XP_002278577.1| PREDICTED: protein EARLY FLOWERING 3-like [V...    66   3e-09
emb|CAN70608.1| hypothetical protein VITISV_040198 [Vitis vinifera]    66   3e-09
ref|XP_002303218.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_004168028.1| PREDICTED: protein EARLY FLOWERING 3-like [C...    59   5e-07

>emb|CBI20609.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
 Frame = +3

Query: 3   LFELHRLMEVQRFIAGSPHLLLEDNFNL----CKASPAKKLPIDDGRISPPQAVKQKDEK 170
           +FELHRL++VQR IAGSPHL+++++  L     K+SPAKKLP++     PP  V  KD+ 
Sbjct: 319 VFELHRLIKVQRLIAGSPHLMVDESAYLGKPSLKSSPAKKLPLEYVVKPPPNMVMHKDDY 378

Query: 171 LRSAN----ATENVVGKPSTP 221
            R+++    + EN VGK   P
Sbjct: 379 ERASHQLECSAENAVGKTHLP 399


>ref|XP_002278577.1| PREDICTED: protein EARLY FLOWERING 3-like [Vitis vinifera]
          Length = 725

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
 Frame = +3

Query: 3   LFELHRLMEVQRFIAGSPHLLLEDNFNL----CKASPAKKLPIDDGRISPPQAVKQKDEK 170
           +FELHRL++VQR IAGSPHL+++++  L     K+SPAKKLP++     PP  V  KD+ 
Sbjct: 373 VFELHRLIKVQRLIAGSPHLMVDESAYLGKPSLKSSPAKKLPLEYVVKPPPNMVMHKDDY 432

Query: 171 LRSAN----ATENVVGKPSTP 221
            R+++    + EN VGK   P
Sbjct: 433 ERASHQLECSAENAVGKTHLP 453


>emb|CAN70608.1| hypothetical protein VITISV_040198 [Vitis vinifera]
          Length = 1138

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
 Frame = +3

Query: 3    LFELHRLMEVQRFIAGSPHLLLEDNFNL----CKASPAKKLPIDDGRISPPQAVKQKDEK 170
            +FELHRL++VQR IAGSPHL+++++  L     K+SPAKKLP++     PP  V  KD+ 
Sbjct: 786  VFELHRLIKVQRLIAGSPHLMVDESAYLGKPSLKSSPAKKLPLEYVVKPPPNMVMHKDDY 845

Query: 171  LRSAN----ATENVVGKPSTP 221
             R+++    + EN VGK   P
Sbjct: 846  ERASHQLECSAENAVGKTHLP 866


>ref|XP_002303218.1| predicted protein [Populus trichocarpa] gi|222840650|gb|EEE78197.1|
           predicted protein [Populus trichocarpa]
          Length = 765

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
 Frame = +3

Query: 3   LFELHRLMEVQRFIAGSPHLLLEDNFNL----CKASPAKKLPIDDGRISPPQAVKQKDEK 170
           +FELHRL++VQ+ IAGSPHLLLEDN  +     K S   K+P     +  P+   QK + 
Sbjct: 426 VFELHRLIKVQKLIAGSPHLLLEDNLYVGRASLKVSQINKVPSKCAMVDKPKDHSQK-QH 484

Query: 171 LRSANATENVVGK---PSTPDDFNEGIVTE 251
             +  A ENVVGK   PST D+ ++  +++
Sbjct: 485 TSADFAGENVVGKLPLPSTNDETSKEPISQ 514


>ref|XP_004168028.1| PREDICTED: protein EARLY FLOWERING 3-like [Cucumis sativus]
          Length = 715

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 40/80 (50%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
 Frame = +3

Query: 3   LFELHRLMEVQRFIAGSPHLLLEDNFNLCKAS----PAKKLPIDDGRISPPQAVKQKDEK 170
           +FELHRL++VQR IAGSPHLLLED   L  +S    PAKKL  D    S  Q     D K
Sbjct: 372 VFELHRLIKVQRLIAGSPHLLLEDGVFLDNSSPSPLPAKKLRSDYTVKSHVQLQPSDDPK 431

Query: 171 LRSAN---ATENVVGKPSTP 221
               N   + EN VGK S P
Sbjct: 432 KPKHNVECSAENAVGKTSLP 451


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