BLASTX nr result
ID: Coptis24_contig00038553
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00038553 (437 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFU95128.1| PetD, partial (chloroplast) [Ploiarium sp. CCD-2012] 270 9e-71 ref|YP_001294301.1| cytochrome b6/f complex subunit IV [Illicium... 270 9e-71 gb|AFU95107.1| PetD, partial (chloroplast) [Balanops pachyphylla... 270 1e-70 gb|AFA26988.1| cytochrome b6/f complex subunit IV, partial [Noli... 270 1e-70 ref|YP_001718468.1| cytochrome b6/f complex subunit IV [Manihot ... 270 1e-70 >gb|AFU95128.1| PetD, partial (chloroplast) [Ploiarium sp. CCD-2012] Length = 164 Score = 270 bits (690), Expect = 9e-71 Identities = 134/137 (97%), Positives = 135/137 (98%) Frame = +2 Query: 2 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 181 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT Sbjct: 28 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 87 Query: 182 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 361 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP Sbjct: 88 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 147 Query: 362 IDKSLTLGLF*IDSALK 412 IDKSLTLGLF IDS +K Sbjct: 148 IDKSLTLGLFQIDSVVK 164 >ref|YP_001294301.1| cytochrome b6/f complex subunit IV [Illicium oligandrum] gi|147917425|gb|ABQ52549.1| cytochrome b6/f complex subunit IV [Illicium oligandrum] Length = 177 Score = 270 bits (690), Expect = 9e-71 Identities = 134/144 (93%), Positives = 137/144 (95%) Frame = +2 Query: 2 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 181 AWPNDLLYIFPVVILGTIACNVGLAVL+PSMIGEPADPFATPLEILPEWYFFPVFQILRT Sbjct: 31 AWPNDLLYIFPVVILGTIACNVGLAVLDPSMIGEPADPFATPLEILPEWYFFPVFQILRT 90 Query: 182 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 361 VPNKLLGVLLMVSVP GLLTVPFLENVNKFQNPFRRPVATTVFL+GTAVALWLGIGATLP Sbjct: 91 VPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLLGTAVALWLGIGATLP 150 Query: 362 IDKSLTLGLF*IDSALK*NTTTYV 433 IDKSLTLGLF IDS +K TYV Sbjct: 151 IDKSLTLGLFQIDSTVKYQGITYV 174 >gb|AFU95107.1| PetD, partial (chloroplast) [Balanops pachyphylla] gi|408900699|gb|AFU95117.1| PetD, partial (chloroplast) [Galearia maingayi] Length = 164 Score = 270 bits (689), Expect = 1e-70 Identities = 134/137 (97%), Positives = 135/137 (98%) Frame = +2 Query: 2 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 181 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT Sbjct: 28 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 87 Query: 182 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 361 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP Sbjct: 88 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 147 Query: 362 IDKSLTLGLF*IDSALK 412 IDKSLTLGLF IDS +K Sbjct: 148 IDKSLTLGLFQIDSIVK 164 >gb|AFA26988.1| cytochrome b6/f complex subunit IV, partial [Nolina atopocarpa] Length = 165 Score = 270 bits (689), Expect = 1e-70 Identities = 134/137 (97%), Positives = 135/137 (98%) Frame = +2 Query: 2 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 181 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT Sbjct: 29 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 88 Query: 182 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 361 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP Sbjct: 89 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 148 Query: 362 IDKSLTLGLF*IDSALK 412 IDKSLTLGLF IDS +K Sbjct: 149 IDKSLTLGLFQIDSIVK 165 >ref|YP_001718468.1| cytochrome b6/f complex subunit IV [Manihot esculenta] gi|225544154|ref|YP_002720143.1| petD [Jatropha curcas] gi|326909423|ref|YP_004327693.1| cytochrome b6/f complex subunit IV [Hevea brasiliensis] gi|157695916|gb|ABV66185.1| cytochrome b6/f complex subunit IV [Manihot esculenta] gi|224979595|gb|ACN72722.1| petD [Jatropha curcas] gi|290489368|gb|ADD31068.1| cytochrome b6/f complex subunit IV protein [Heuchera sanguinea] gi|290489370|gb|ADD31069.1| cytochrome b6/f complex subunit IV protein [Liquidambar styraciflua] gi|308523537|gb|ADO33587.1| cytochrome b6/f complex subunit IV [Hevea brasiliensis] Length = 167 Score = 270 bits (689), Expect = 1e-70 Identities = 134/137 (97%), Positives = 135/137 (98%) Frame = +2 Query: 2 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 181 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT Sbjct: 31 AWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRT 90 Query: 182 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 361 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP Sbjct: 91 VPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLP 150 Query: 362 IDKSLTLGLF*IDSALK 412 IDKSLTLGLF IDS +K Sbjct: 151 IDKSLTLGLFQIDSIVK 167