BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038542
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containi...    91   7e-17
ref|XP_002520160.1| pentatricopeptide repeat-containing protein,...    91   7e-17
ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|2...    86   3e-15
ref|XP_003612377.1| Selenium binding protein-like protein [Medic...    85   5e-15

>ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  111 bits (278), Expect = 5e-23
 Identities = 54/104 (51%), Positives = 74/104 (71%), Gaps = 4/104 (3%)
 Frame = -3

Query: 301 ISSKLLMWC----DDISFASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYNMMRRN 134
           +SSKLL +      D +F+  LF QI  PN+++WN+M R Y+ S  P +++ +YN+M RN
Sbjct: 62  VSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRN 121

Query: 133 GVVVPDNYTFPFVLKACSRLLVLDKGREVHLSSLKFGFEGDVFV 2
           G + PDNY+FPFVLKAC+RL +L KGRE+H S+LK G   DVFV
Sbjct: 122 GTL-PDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFV 164


>ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 40/91 (43%), Positives = 60/91 (65%)
 Frame = -3

Query: 274 DDISFASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYNMMRRNGVVVPDNYTFPFV 95
           D +  + LLF QI+ PN++ WN M R Y+ S+ P +++ +Y  M   G+  P+N+TFPF+
Sbjct: 58  DGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFL 117

Query: 94  LKACSRLLVLDKGREVHLSSLKFGFEGDVFV 2
           L +C+RL  L+ G EVH   +K GFE D+FV
Sbjct: 118 LNSCARLSSLEPGHEVHSHIIKHGFESDLFV 148


>ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540652|gb|EEF42215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 330

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = -3

Query: 304 FISSKLLMWC--DDISFASLLFKQIENPNIYAWNYMSRIYAHS-EMPEKSVFVYNMMRRN 134
           F+ SK+L +   +D+ +A  LF + +NPN + WN + R  A S +  E+S  +Y  M   
Sbjct: 65  FLYSKILHFSSFNDLDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIEQ 124

Query: 133 GVVVPDNYTFPFVLKACSRLLVLDKGREVHLSSLKFGFEGDVFV 2
           G V+PD +T+PFVLKAC+ L  L++G++VH   LK GFE DV++
Sbjct: 125 GAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDVYI 168


>ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|222866487|gb|EEF03618.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
 Frame = -3

Query: 304 FISSKLLMWCD--DISFASLLFKQIENPNIYAWNYMSRIYAHSE---MPEKSVFVYNMMR 140
           F+ S++L +    D+++A  +F Q++NPN + WN + R  A S+   +  +++ +YN M 
Sbjct: 58  FLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTML 117

Query: 139 RNGVVVPDNYTFPFVLKACSRLLVLDKGREVHLSSLKFGFEGDVFV 2
           +     PDN+TFPFVLKAC+ L  L +G++ H   LK GF+ DV++
Sbjct: 118 QRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYI 163


>ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
           gi|355513712|gb|AES95335.1| Selenium binding
           protein-like protein [Medicago truncatula]
          Length = 611

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
 Frame = -3

Query: 295 SKLLMWCDD------ISFASLLFKQIENPNIYAWNYMSRIYAHSEMPEKSVFVYNMMRRN 134
           SKL+ +C D       ++A+LLF+QI +PN+Y +N M + YA S  P  S+ +Y  M +N
Sbjct: 42  SKLIDFCVDSHFDEYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQN 101

Query: 133 GVVVPDNYTFPFVLKACSRLLVLDKGREVHLSSLKFGFEGDVFV 2
           G   PD++TFPFVLKACS +     G+ VH   LK GFE +V+V
Sbjct: 102 G-YSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYV 144