BLASTX nr result
ID: Coptis24_contig00038535
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00038535
(262 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat... 130 9e-29
emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera] 130 9e-29
ref|XP_002512645.1| pentatricopeptide repeat-containing protein,... 125 4e-27
ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|2... 122 2e-26
ref|XP_003617808.1| Pentatricopeptide repeat-containing protein ... 118 6e-25
>ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 130 bits (328), Expect = 9e-29
Identities = 64/87 (73%), Positives = 73/87 (83%)
Frame = +2
Query: 2 LQMLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKC 181
L ML+ +VQAT+VTYSS LRACASLA LEPG+QIH L KT F +D VV NALIDMYAKC
Sbjct: 228 LNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKC 287
Query: 182 GSIKNARFMFDTMNELDEVSWNSMISG 262
GSIK+AR +FD MN+ DEVSWN+MISG
Sbjct: 288 GSIKDARLVFDLMNKQDEVSWNAMISG 314
Score = 66.6 bits (161), Expect = 2e-09
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = +2
Query: 11 LDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCGSI 190
L +V Q T++SVL+ACA++ L G QIH + K D V NAL+D+YAKCG +
Sbjct: 130 LHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRM 189
Query: 191 KNARFMFDTMNELDEVSWNSMISG 262
+N+ +F ++V+WN++I G
Sbjct: 190 ENSMELFAESPHRNDVTWNTVIVG 213
>emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 130 bits (328), Expect = 9e-29
Identities = 64/87 (73%), Positives = 73/87 (83%)
Frame = +2
Query: 2 LQMLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKC 181
L ML+ +VQAT+VTYSS LRACASLA LEPG+QIH L KT F +D VV NALIDMYAKC
Sbjct: 432 LNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKC 491
Query: 182 GSIKNARFMFDTMNELDEVSWNSMISG 262
GSIK+AR +FD MN+ DEVSWN+MISG
Sbjct: 492 GSIKDARLVFDLMNKQDEVSWNAMISG 518
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 5 QMLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCG 184
QM A V Q T++SVL+ACA++ L G QIH + K D V NAL+D+YAKCG
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCG 390
Query: 185 SIKNARFMF-DTMNELDEVSWNSMISG 262
++N+ +F ++ + D WN++I G
Sbjct: 391 RMENSMXLFAESPHRNDVTPWNTVIVG 417
Score = 55.8 bits (133), Expect = 4e-06
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +2
Query: 5 QMLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCG 184
QM + T++SV +AC L + G +HG K+ + D V AL+D+Y K G
Sbjct: 230 QMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSG 289
Query: 185 SIKNARFMFDTMNELDEVSWNSMIS 259
I +AR F+ + + D + W+ MI+
Sbjct: 290 DIDDARXAFEEIPKKDVIPWSFMIA 314
>ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548606|gb|EEF50097.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 716
Score = 125 bits (314), Expect = 4e-27
Identities = 60/85 (70%), Positives = 72/85 (84%)
Frame = +2
Query: 8 MLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCGS 187
ML+ QVQA++VTYSSVLRACASLA +E G QIH L KT++ +D VV NALIDMYAKCGS
Sbjct: 335 MLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGS 394
Query: 188 IKNARFMFDTMNELDEVSWNSMISG 262
IKNAR +FD ++E DE+SWN+MISG
Sbjct: 395 IKNARLVFDMLSERDEISWNAMISG 419
Score = 69.3 bits (168), Expect = 3e-10
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 5 QMLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCG 184
QM A V Q T++SVL++CAS+ L+ G Q+H + K + V NAL+D+YAKCG
Sbjct: 233 QMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCG 292
Query: 185 SIKNARFMFDTMNELDEVSWNSMISG 262
+ N+ +F + +EV+WN+MI G
Sbjct: 293 RLDNSMKLFMELPNRNEVTWNTMIVG 318
>ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|222842084|gb|EEE79631.1|
predicted protein [Populus trichocarpa]
Length = 820
Score = 122 bits (307), Expect = 2e-26
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = +2
Query: 8 MLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCGS 187
ML+ QVQ T+VTYSSVLRACA +A LEPG QIH L KT++ ++TVV NALIDMYAKCG+
Sbjct: 439 MLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGN 498
Query: 188 IKNARFMFDTMNELDEVSWNSMISG 262
IK+AR +FD + E D+VSWN+MISG
Sbjct: 499 IKDARLVFDMLREHDQVSWNAMISG 523
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +2
Query: 23 VQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCGSIKNAR 202
V Q T +S+L+ACASL L+ G QIH + K + V NAL+DMYAKCG ++N+
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL 402
Query: 203 FMFDTMNELDEVSWNSMISG 262
+F +VSWN++I G
Sbjct: 403 QLFSESPNCTDVSWNTVIVG 422
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/73 (38%), Positives = 43/73 (58%)
Frame = +2
Query: 41 TYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCGSIKNARFMFDTM 220
T++SVL+AC L V G +HG KT + E+ V LID+Y K G + +A +F+ M
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307
Query: 221 NELDEVSWNSMIS 259
+ D + W+ MI+
Sbjct: 308 PKDDVIPWSFMIA 320
>ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 811
Score = 118 bits (295), Expect = 6e-25
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +2
Query: 8 MLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKCGS 187
ML+ +Q T+VTYSSVLRA ASLA LEPG+QIH L KT++++DTVV N+LIDMYAKCG
Sbjct: 430 MLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGR 489
Query: 188 IKNARFMFDTMNELDEVSWNSMISG 262
I +AR FD MN+ DEVSWN+MI G
Sbjct: 490 INDARLTFDKMNKRDEVSWNAMICG 514
Score = 72.0 bits (175), Expect = 5e-11
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +2
Query: 2 LQMLDAQVQATQVTYSSVLRACASLAVLEPGIQIHGLMSKTVFSEDTVVCNALIDMYAKC 181
L+M V T++SVL+ACAS L+ G QIH + K + + V NA++D+YAKC
Sbjct: 327 LRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKC 386
Query: 182 GSIKNARFMFDTMNELDEVSWNSMISG 262
G I+N+ +F+ + + ++V+WN++I G
Sbjct: 387 GEIENSMKLFEELPDRNDVTWNTIIVG 413