BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038434
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   111   5e-23
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   110   2e-22
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   107   1e-21
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   106   2e-21
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   105   5e-21

>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  111 bits (278), Expect = 5e-23
 Identities = 56/131 (42%), Positives = 81/131 (61%)
 Frame = -3

Query: 393 ITQLSFADDLIAFMNEDVATVRSLVSTLGKFRTCSGLEVNVGKSQVFFAGMSEDMCEEAN 214
           +T LSFADDL+   +  V ++  +V     F  CSGL +++ KS V+FAG+S    +E  
Sbjct: 80  LTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVM 139

Query: 213 GVLQFSVGT*LVKYLGLPLITTKLSYADCLPLVTKVAKRIQSWKGKSLSYAGRAQLIKVV 34
               F+VGT  V+YLGLPL+T +LS  D LPL+  + K+I SW  + LSYAGR  LI  V
Sbjct: 140 AHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIKKKIGSWSARFLSYAGRLNLISSV 199

Query: 33  LSNLNIYWISS 1
           L ++  +W+ +
Sbjct: 200 LWSICNFWMGA 210


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  110 bits (274), Expect = 2e-22
 Identities = 53/131 (40%), Positives = 81/131 (61%)
 Frame = -3

Query: 393  ITQLSFADDLIAFMNEDVATVRSLVSTLGKFRTCSGLEVNVGKSQVFFAGMSEDMCEEAN 214
            +T L FADD++ F      ++  +++    F   SGL +++ KS +F A +S + C    
Sbjct: 953  LTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASIL 1012

Query: 213  GVLQFSVGT*LVKYLGLPLITTKLSYADCLPLVTKVAKRIQSWKGKSLSYAGRAQLIKVV 34
                F  G+  V+YLGLPL+T +++ ADCLPL+ K+  RI SWK + LSYAGR QL+  V
Sbjct: 1013 ARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSV 1072

Query: 33   LSNLNIYWISS 1
            +S+L  +WIS+
Sbjct: 1073 ISSLTKFWISA 1083


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  107 bits (266), Expect = 1e-21
 Identities = 55/131 (41%), Positives = 80/131 (61%)
 Frame = -3

Query: 393  ITQLSFADDLIAFMNEDVATVRSLVSTLGKFRTCSGLEVNVGKSQVFFAGMSEDMCEEAN 214
            +T LSFADDL+   +  + ++  ++    +F   SGL +++ KS V+ AG+S     E  
Sbjct: 698  LTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVA 757

Query: 213  GVLQFSVGT*LVKYLGLPLITTKLSYADCLPLVTKVAKRIQSWKGKSLSYAGRAQLIKVV 34
                FS G   V+YLGLPLIT +LS  DCLPL+ +V KRI SW  + LSYAGR  LI  V
Sbjct: 758  DRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSV 817

Query: 33   LSNLNIYWISS 1
            L ++  +W+++
Sbjct: 818  LWSICNFWLAA 828


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  106 bits (264), Expect = 2e-21
 Identities = 46/128 (35%), Positives = 77/128 (60%)
 Frame = -3

Query: 393  ITQLSFADDLIAFMNEDVATVRSLVSTLGKFRTCSGLEVNVGKSQVFFAGMSEDMCEEAN 214
            +T L FADDL+ F   D +++  +++    F   SGL+ ++ KS ++F G+  +  E+  
Sbjct: 686  LTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLA 745

Query: 213  GVLQFSVGT*LVKYLGLPLITTKLSYADCLPLVTKVAKRIQSWKGKSLSYAGRAQLIKVV 34
              +Q  +G+   +YLG+PL + KL+++ C PL+ K+  R Q W    LSYAGR QL+K +
Sbjct: 746  DRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTI 805

Query: 33   LSNLNIYW 10
            L ++  YW
Sbjct: 806  LYSMQNYW 813


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  105 bits (261), Expect = 5e-21
 Identities = 53/130 (40%), Positives = 82/130 (63%)
 Frame = -3

Query: 393  ITQLSFADDLIAFMNEDVATVRSLVSTLGKFRTCSGLEVNVGKSQVFFAGMSEDMCEEAN 214
            +T L FADD++ F +    +++  ++   KF   S L++++ KS +F AG+S +      
Sbjct: 845  LTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSIL 904

Query: 213  GVLQFSVGT*LVKYLGLPLITTKLSYADCLPLVTKVAKRIQSWKGKSLSYAGRAQLIKVV 34
                F +GT  VKYLGLPL+T +++ +D LPLV K+  RI SW  + LS+AGR QLIK V
Sbjct: 905  QQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSV 964

Query: 33   LSNLNIYWIS 4
            LS++  +W+S
Sbjct: 965  LSSITNFWLS 974