BLASTX nr result
ID: Coptis24_contig00038414
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00038414 (424 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|2... 172 3e-41 ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containi... 163 2e-38 ref|XP_003552721.1| PREDICTED: pentatricopeptide repeat-containi... 157 1e-36 gb|ACU18704.1| unknown [Glycine max] 157 1e-36 ref|XP_003624339.1| Pentatricopeptide repeat-containing protein ... 139 2e-31 >ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|222837367|gb|EEE75746.1| predicted protein [Populus trichocarpa] Length = 484 Score = 172 bits (435), Expect = 3e-41 Identities = 88/140 (62%), Positives = 105/140 (75%) Frame = +3 Query: 3 ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 182 +TSGE ID AL IFR IESPD YSYSN+LVGLCKFGR E+A+E F EM A LVPT+SAV Sbjct: 124 DTSGELIDVALSIFRGIESPDTYSYSNVLVGLCKFGRFETAIEFFQEMGRARLVPTRSAV 183 Query: 183 NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 362 NFL+ +LC L+ E + VRV + R+P+TILVPNVG GAI AV +F + DLGL P Sbjct: 184 NFLMRELCLLSAKEGAVNEVRVHSSRKPYTILVPNVGPKSGAIRPAVGVFLAVCDLGLLP 243 Query: 363 SPFIINQLISELCRLRKIDE 422 S F+I QLI+ELCRL K+ E Sbjct: 244 STFVIIQLITELCRLGKMTE 263 >ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Cucumis sativus] gi|449484825|ref|XP_004156991.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Cucumis sativus] Length = 579 Score = 163 bits (412), Expect = 2e-38 Identities = 82/140 (58%), Positives = 99/140 (70%) Frame = +3 Query: 3 ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 182 E +GE ID AL IFR+IE PD YSYSN+++GLCKFGR +A+E F EM A LVPT++AV Sbjct: 219 EPTGELIDTALKIFRRIELPDKYSYSNVIIGLCKFGRYSTAIEAFGEMYRAGLVPTRTAV 278 Query: 183 NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 362 N LIG LC L+ E +E+VRV + RPFT+LVPNV GAI AV IFW L L P Sbjct: 279 NILIGNLCSLSAKEGAVEKVRVNSTYRPFTVLVPNVNPKSGAIEPAVGIFWAANKLSLVP 338 Query: 363 SPFIINQLISELCRLRKIDE 422 S F+ QLISELCRL ++ E Sbjct: 339 SSFVTVQLISELCRLGQMQE 358 >ref|XP_003552721.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Glycine max] Length = 367 Score = 157 bits (396), Expect = 1e-36 Identities = 76/135 (56%), Positives = 103/135 (76%) Frame = +3 Query: 3 ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 182 E+S E I+ AL IF KI++PD YS SN++VGLCK GR+ESA+E+F M ++PT+SAV Sbjct: 9 ESSLEMIELALSIFHKIDAPDTYSCSNMIVGLCKLGRLESALEIFDRMNRIGVLPTRSAV 68 Query: 183 NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 362 N LIG+LC ++ E +E+VRVRN RRP+TILVPN+G + GAI AV++FW + GL P Sbjct: 69 NLLIGELCLMSGKEGSVEKVRVRNTRRPYTILVPNMGGNSGAIQPAVQVFWAVCSSGLLP 128 Query: 363 SPFIINQLISELCRL 407 S F++ +L+SELCRL Sbjct: 129 SAFVVVKLMSELCRL 143 >gb|ACU18704.1| unknown [Glycine max] Length = 367 Score = 157 bits (396), Expect = 1e-36 Identities = 76/135 (56%), Positives = 103/135 (76%) Frame = +3 Query: 3 ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 182 E+S E I+ AL IF KI++PD YS SN++VGLCK GR+ESA+E+F M ++PT+SAV Sbjct: 9 ESSLEMIELALSIFHKIDAPDTYSCSNMIVGLCKLGRLESALEIFDRMNRIGVLPTRSAV 68 Query: 183 NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 362 N LIG+LC ++ E +E+VRVRN RRP+TILVPN+G + GAI AV++FW + GL P Sbjct: 69 NLLIGELCLMSGKEGSVEKVRVRNTRRPYTILVPNMGGNSGAIQPAVQVFWAVCSSGLLP 128 Query: 363 SPFIINQLISELCRL 407 S F++ +L+SELCRL Sbjct: 129 SAFVVVKLMSELCRL 143 >ref|XP_003624339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355499354|gb|AES80557.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 578 Score = 139 bits (350), Expect = 2e-31 Identities = 69/140 (49%), Positives = 100/140 (71%) Frame = +3 Query: 3 ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 182 ++S E I+ AL IF KIESPD YS SN++VGLC+ GR E+A+E+F +M + PT+SA+ Sbjct: 220 QSSEEMIELALSIFDKIESPDTYSCSNMIVGLCRLGRFEAALEIFRKMDRVGVHPTRSAM 279 Query: 183 NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 362 N LIG LC ++ E +E+V+V RRP++ILVPN+G + AI AV++F + + GL P Sbjct: 280 NVLIGDLCLMSAKEGSVEKVKVTKTRRPYSILVPNMGGNRAAIQPAVEVFSAVVNSGLLP 339 Query: 363 SPFIINQLISELCRLRKIDE 422 S F++ +L+SELCRL +E Sbjct: 340 STFVVFRLMSELCRLGNTEE 359