BLASTX nr result
ID: Coptis24_contig00038341
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00038341 (237 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat... 127 1e-27 ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 122 2e-26 ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat... 122 2e-26 ref|XP_002887547.1| pentatricopeptide repeat-containing protein ... 122 4e-26 ref|XP_002511572.1| pentatricopeptide repeat-containing protein,... 120 1e-25 >ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Vitis vinifera] gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera] Length = 764 Score = 127 bits (318), Expect = 1e-27 Identities = 59/79 (74%), Positives = 69/79 (87%) Frame = -1 Query: 237 AVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAMEGVMSEMRRNVD 58 AVVK QK+PL+ALE+FNS KEDGFKHT+ TYK M+EKLG HG+FEAME V++E R N+D Sbjct: 12 AVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNID 71 Query: 57 NGLMEGVYIGAMRNYGRNG 1 NGL+EGVYIGAMRNYGR G Sbjct: 72 NGLLEGVYIGAMRNYGRKG 90 >ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g74580-like [Cucumis sativus] Length = 877 Score = 122 bits (307), Expect = 2e-26 Identities = 55/79 (69%), Positives = 67/79 (84%) Frame = -1 Query: 237 AVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAMEGVMSEMRRNVD 58 AV++ Q DPL AL+MFN EDGFKHT+ TYKCM+EKLGLHGKFEAME V++EMR+NVD Sbjct: 12 AVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVD 71 Query: 57 NGLMEGVYIGAMRNYGRNG 1 + ++EGVYIG MR+YGR G Sbjct: 72 SKMLEGVYIGIMRDYGRKG 90 >ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580-like [Cucumis sativus] Length = 857 Score = 122 bits (307), Expect = 2e-26 Identities = 55/79 (69%), Positives = 67/79 (84%) Frame = -1 Query: 237 AVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAMEGVMSEMRRNVD 58 AV++ Q DPL AL+MFN EDGFKHT+ TYKCM+EKLGLHGKFEAME V++EMR+NVD Sbjct: 12 AVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVD 71 Query: 57 NGLMEGVYIGAMRNYGRNG 1 + ++EGVYIG MR+YGR G Sbjct: 72 SKMLEGVYIGIMRDYGRKG 90 >ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 763 Score = 122 bits (305), Expect = 4e-26 Identities = 53/78 (67%), Positives = 69/78 (88%) Frame = -1 Query: 234 VVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAMEGVMSEMRRNVDN 55 V++CQKDP++ALEMFNS KEDGFKHT+ TY+ ++EKLGL+GKFEAME V+ +MR+NV N Sbjct: 13 VIRCQKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGN 72 Query: 54 GLMEGVYIGAMRNYGRNG 1 ++EGVY+GAM+NYGR G Sbjct: 73 HMLEGVYVGAMKNYGRKG 90 >ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 735 Score = 120 bits (301), Expect = 1e-25 Identities = 56/79 (70%), Positives = 65/79 (82%) Frame = -1 Query: 237 AVVKCQKDPLRALEMFNSAAKEDGFKHTVYTYKCMVEKLGLHGKFEAMEGVMSEMRRNVD 58 AV+K QKDPL+AL +FNS KEDGFKHT TYK M+EKLG HG+F+AME V+ EMR NVD Sbjct: 12 AVLKYQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVD 71 Query: 57 NGLMEGVYIGAMRNYGRNG 1 N L+EGVY+ AMRNYGR G Sbjct: 72 NSLLEGVYVSAMRNYGRKG 90