BLASTX nr result

ID: Coptis24_contig00038274 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038274
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH92945.1| unknown [Dimocarpus longan]                             36   3e-06

>gb|ACH92945.1| unknown [Dimocarpus longan]
          Length = 203

 Score = 36.2 bits (82), Expect(3) = 3e-06
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
 Frame = +3

Query: 189 WKFMSRLKEAHP-DAKVKFSE-HLLVNVSAYLNLTGRVQYN---VFLEGIYDTLIG 341
           W  +S  +E  P   K +++E  LL+NVSA L+L G+   N   +FLEG+YD  +G
Sbjct: 118 WSNVSAKEEETPYHTKAQYTEKQLLLNVSAQLSLVGKSYSNFSGLFLEGLYDPHVG 173



 Score = 32.3 bits (72), Expect(3) = 3e-06
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +1

Query: 43  ILSLSRLSDELSVHLSVIMDPFTNTKSPK 129
           + SLS LS++L++H+S + DPF  ++ P+
Sbjct: 72  LASLSLLSEDLTLHISAVPDPFPKSRLPR 100



 Score = 26.6 bits (57), Expect(3) = 3e-06
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 PTLSRPRTFIRMTILSFRPLFGQ 178
           P    PRT I+M ILS  PLFG+
Sbjct: 94  PKSRLPRTDIQMEILSVGPLFGR 116


Top