BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038255
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16054.3| unnamed protein product [Vitis vinifera]              117   1e-24
ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002520500.1| pentatricopeptide repeat-containing protein,...   114   6e-24
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2...   114   6e-24
ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23

>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  117 bits (293), Expect = 1e-24
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
 Frame = +2

Query: 5   NNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVLVHHHVID 175
           +NNNN LIQ LCK+ NL QAL++LS EPNPTQ TYE LILSCT   SL  G+ +H H+I 
Sbjct: 47  SNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 176 NGFDQDSFLATKLINMYTEFDSIDNA 253
           +G DQD FLATKLINMY+E DSIDNA
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNA 132


>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  117 bits (293), Expect = 1e-24
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
 Frame = +2

Query: 5   NNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVLVHHHVID 175
           +NNNN LIQ LCK+ NL QAL++LS EPNPTQ TYE LILSCT   SL  G+ +H H+I 
Sbjct: 47  SNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 176 NGFDQDSFLATKLINMYTEFDSIDNA 253
           +G DQD FLATKLINMY+E DSIDNA
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNA 132


>ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540342|gb|EEF41913.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 414

 Score =  114 bits (286), Expect = 6e-24
 Identities = 56/84 (66%), Positives = 65/84 (77%), Gaps = 3/84 (3%)
 Frame = +2

Query: 11  NNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVLVHHHVIDNG 181
           N+N+LIQ LCK+ NLKQAL +L NEP+P Q TYE L+LSCT   S  D   VH H++DNG
Sbjct: 42  NSNKLIQSLCKQGNLKQALNLLCNEPDPAQHTYELLLLSCTHQNSFLDAQFVHQHLLDNG 101

Query: 182 FDQDSFLATKLINMYTEFDSIDNA 253
           FDQD FLATKLINMY+ F SIDNA
Sbjct: 102 FDQDPFLATKLINMYSSFGSIDNA 125


>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
           predicted protein [Populus trichocarpa]
          Length = 650

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/84 (69%), Positives = 67/84 (79%), Gaps = 3/84 (3%)
 Frame = +2

Query: 11  NNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVLVHHHVIDNG 181
           +NN+LIQ LCK+ NL QAL++LS EPNP Q TYE LILSCT   SL D   VH H+++NG
Sbjct: 41  DNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENG 100

Query: 182 FDQDSFLATKLINMYTEFDSIDNA 253
           FDQD FLATKLINMY+ FDSIDNA
Sbjct: 101 FDQDPFLATKLINMYSFFDSIDNA 124


>ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  112 bits (279), Expect = 4e-23
 Identities = 58/86 (67%), Positives = 66/86 (76%), Gaps = 3/86 (3%)
 Frame = +2

Query: 5   NNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSC---TSLSDGVLVHHHVID 175
           N+NNN+LIQ LCK  NLKQAL +L  EPNPTQQT+EHLI SC    SLS G+ VH  ++D
Sbjct: 47  NSNNNQLIQSLCKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 176 NGFDQDSFLATKLINMYTEFDSIDNA 253
           +GFDQD FLATKLINMY E  SID A
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRA 132