BLASTX nr result

ID: Coptis24_contig00038246 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038246
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326526.1| predicted protein [Populus trichocarpa] gi|2...    57   1e-11
ref|XP_003533435.1| PREDICTED: uncharacterized protein LOC100808...    53   2e-11
ref|XP_002527676.1| conserved hypothetical protein [Ricinus comm...    50   4e-09
ref|XP_002870079.1| hypothetical protein ARALYDRAFT_329738 [Arab...    51   2e-08
emb|CAA17132.1| putative protein [Arabidopsis thaliana] gi|72685...    48   1e-07

>ref|XP_002326526.1| predicted protein [Populus trichocarpa] gi|222833848|gb|EEE72325.1|
           predicted protein [Populus trichocarpa]
          Length = 835

 Score = 57.4 bits (137), Expect(2) = 1e-11
 Identities = 22/34 (64%), Positives = 28/34 (82%)
 Frame = +2

Query: 2   NTCFLNSILQCFNHTVPFVQSLRNWNHSSPCLLE 103
           NTC++N+ILQCF HTVP VQ+LR+ NH  PC+ E
Sbjct: 282 NTCYINAILQCFTHTVPLVQALRSCNHEMPCITE 315



 Score = 36.6 bits (83), Expect(2) = 1e-11
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +1

Query: 103 DGFCVLCELRDHIELXXXXXXXXXXPYGFVDNL 201
           +GFCVLC LRDHIEL          P   V+NL
Sbjct: 315 EGFCVLCVLRDHIELSLSSSGKILEPLKLVNNL 347


>ref|XP_003533435.1| PREDICTED: uncharacterized protein LOC100808015 [Glycine max]
          Length = 730

 Score = 52.8 bits (125), Expect(2) = 2e-11
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   NTCFLNSILQCFNHTVPFVQSLRNWNHSSPC 94
           NTCFLN+ILQCF HTVP VQ LR+  H  PC
Sbjct: 131 NTCFLNAILQCFTHTVPLVQGLRSSTHLIPC 161



 Score = 40.8 bits (94), Expect(2) = 2e-11
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 85  IPLSS-RDGFCVLCELRDHIELXXXXXXXXXXPYGFVDNLSYF 210
           IP S  +DGFCV+C LR H+E           P  FV+NL+YF
Sbjct: 159 IPCSGHKDGFCVICALRIHVERSLVAPGGTLSPLKFVNNLNYF 201


>ref|XP_002527676.1| conserved hypothetical protein [Ricinus communis]
           gi|223532981|gb|EEF34747.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 753

 Score = 49.7 bits (117), Expect(2) = 4e-09
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +2

Query: 2   NTCFLNSILQCFNHTVPFVQSLRNWNHSSPC 94
           NTCF+N++LQ F HTVP V++LR+ NH  PC
Sbjct: 187 NTCFINAVLQSFTHTVPLVKALRSCNHVMPC 217



 Score = 35.8 bits (81), Expect(2) = 4e-09
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 DGFCVLCELRDHIELXXXXXXXXXXPYGFVDNL 201
           +GFC +C LRDHIEL          P   VDNL
Sbjct: 222 EGFCAVCALRDHIELSLTSSGKAVSPSKIVDNL 254


>ref|XP_002870079.1| hypothetical protein ARALYDRAFT_329738 [Arabidopsis lyrata subsp.
           lyrata] gi|297315915|gb|EFH46338.1| hypothetical protein
           ARALYDRAFT_329738 [Arabidopsis lyrata subsp. lyrata]
          Length = 1082

 Score = 51.2 bits (121), Expect(2) = 2e-08
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   NTCFLNSILQCFNHTVPFVQSLRNWNHSSPC 94
           NTCFLNS+ QCF HTVP ++SLR + +  PC
Sbjct: 568 NTCFLNSVFQCFTHTVPLIESLRAYKYEVPC 598



 Score = 32.3 bits (72), Expect(2) = 2e-08
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 FCVLCELRDHIELXXXXXXXXXXPYGFVDNLSYF 210
           FCV+  LR HIE           PY F++NL+YF
Sbjct: 605 FCVIRALRYHIEAALRPERCPIAPYYFLNNLNYF 638


>emb|CAA17132.1| putative protein [Arabidopsis thaliana] gi|7268541|emb|CAB78791.1|
           putative protein [Arabidopsis thaliana]
          Length = 1082

 Score = 47.8 bits (112), Expect(2) = 1e-07
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   NTCFLNSILQCFNHTVPFVQSLRNWNHSSPC 94
           N+CFLNS+ QCF HTVP ++SL ++ +  PC
Sbjct: 570 NSCFLNSVFQCFTHTVPLIESLLSFRYEVPC 600



 Score = 32.7 bits (73), Expect(2) = 1e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 109 FCVLCELRDHIELXXXXXXXXXXPYGFVDNLSYF 210
           FCV+  +R HIE           PY F DNL+YF
Sbjct: 607 FCVIRAIRYHIEAALRPERCPIAPYFFFDNLNYF 640


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